Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP02_RS00010 Genome accession   NZ_CP122948
Coordinates   1602..3041 (+) Length   479 a.a.
NCBI ID   WP_286463962.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS00005 (QAP02_00005) dnaA 1..1374 (+) 1374 WP_140463077.1 chromosomal replication initiator protein DnaA -
  QAP02_RS00010 (QAP02_00010) comH 1602..3041 (+) 1440 WP_286463962.1 competence protein Machinery gene
  QAP02_RS00020 (QAP02_00020) - 3221..3973 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  QAP02_RS00025 (QAP02_00025) - 3970..4605 (-) 636 WP_286463966.1 outer membrane protein -
  QAP02_RS00030 (QAP02_00030) - 4609..4956 (-) 348 WP_286463967.1 hypothetical protein -
  QAP02_RS00035 (QAP02_00035) recG 5038..6902 (+) 1865 Protein_5 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54554.31 Da        Isoelectric Point: 6.5949

>NTDB_id=817309 QAP02_RS00010 WP_286463962.1 1602..3041(+) (comH) [Helicobacter pylori strain BS21]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGIYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLSPNRPTIPRNTQIVFSSKELKESHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNSKNSLLQPL
VTPSKVSPTNETQTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADASENNESNENKDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQAEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMALEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817309 QAP02_RS00010 WP_286463962.1 1602..3041(+) (comH) [Helicobacter pylori strain BS21]
ATGAAAAAATCCCTTTGTTTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGTACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCCAAACAGGTTTTAGGCATTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATCGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACACTAAGCCCTAACCGCCCTACTATCCCTAGAAACACCCAAATCGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACTCAAACCCAATACCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCTAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAGTAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACCAAACCCCCTTTAAAACATTCTTC
AGAAGATCAAGAAAACAACCTTTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATGCGA
GTGAAAACAATGAAAGCAACGAAAATAAGGACAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTTTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGATATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGAGCCAGAGCAAGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTATTTATGAGCGCCCCAAACAAGACGACC
AAGCAGAGCCGACTTTCTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAGAGCAGTGA
ATATAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGCCTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

94.781

100

0.948