Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QAD57_RS07175 Genome accession   NZ_CP122947
Coordinates   1513024..1513428 (+) Length   134 a.a.
NCBI ID   WP_286445760.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1508024..1518428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS07140 (QAD57_07135) - 1508201..1509139 (-) 939 WP_286445756.1 tetraacyldisaccharide 4'-kinase -
  QAD57_RS07145 (QAD57_07140) - 1509136..1509918 (-) 783 WP_286445757.1 NAD+ synthase -
  QAD57_RS07155 (QAD57_07150) ilvC 1510167..1511159 (+) 993 WP_286445758.1 ketol-acid reductoisomerase -
  QAD57_RS07160 (QAD57_07155) minD 1511184..1511990 (+) 807 WP_180445409.1 septum site-determining protein MinD -
  QAD57_RS07165 (QAD57_07160) minE 1511987..1512220 (+) 234 WP_001916961.1 cell division topological specificity factor MinE -
  QAD57_RS07170 (QAD57_07165) dprA 1512227..1513027 (+) 801 WP_286445759.1 DNA-processing protein DprA Machinery gene
  QAD57_RS07175 (QAD57_07170) dprB 1513024..1513428 (+) 405 WP_286445760.1 Holliday junction resolvase RuvX Machinery gene
  QAD57_RS07180 (QAD57_07175) - 1513559..1514353 (+) 795 WP_286445761.1 tetratricopeptide repeat protein -
  QAD57_RS07185 (QAD57_07180) - 1514539..1514877 (+) 339 WP_286445762.1 hypothetical protein -
  QAD57_RS07190 (QAD57_07185) - 1514861..1515421 (+) 561 WP_286445763.1 hypothetical protein -
  QAD57_RS07195 (QAD57_07190) - 1515676..1516101 (+) 426 WP_286445764.1 hypothetical protein -
  QAD57_RS07200 (QAD57_07195) - 1516151..1516354 (+) 204 WP_286445765.1 hypothetical protein -
  QAD57_RS07205 (QAD57_07200) - 1516438..1516819 (+) 382 Protein_1403 DUF1294 domain-containing protein -
  QAD57_RS07210 (QAD57_07205) - 1516819..1517604 (+) 786 WP_286445766.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15323.76 Da        Isoelectric Point: 8.9953

>NTDB_id=817307 QAD57_RS07175 WP_286445760.1 1513024..1513428(+) (dprB) [Helicobacter pylori strain BS07]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKQIAIKDGRLDSLSACRILERYYQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=817307 QAD57_RS07175 WP_286445760.1 1513024..1513428(+) (dprB) [Helicobacter pylori strain BS07]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCACGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCAGAT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94