Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAD57_RS05690 Genome accession   NZ_CP122947
Coordinates   1209278..1210591 (+) Length   437 a.a.
NCBI ID   WP_286445511.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1204278..1215591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS05670 (QAD57_05665) crdR 1204592..1205233 (+) 642 WP_286445507.1 copper response regulator transcription factor CrdR -
  QAD57_RS05675 (QAD57_05670) crdS 1205199..1206401 (+) 1203 WP_286446353.1 copper-sensing histidine kinase CrdS -
  QAD57_RS05680 (QAD57_05675) - 1206404..1207804 (+) 1401 WP_286445508.1 NAD(P)H-hydrate dehydratase -
  QAD57_RS05685 (QAD57_05680) - 1207815..1209281 (+) 1467 WP_286445510.1 replicative DNA helicase -
  QAD57_RS05690 (QAD57_05685) comEC/comE3 1209278..1210591 (+) 1314 WP_286445511.1 ComEC/Rec2 family competence protein Machinery gene
  QAD57_RS05695 (QAD57_05690) mqnP 1210620..1211504 (+) 885 WP_286445514.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAD57_RS05700 (QAD57_05695) - 1211497..1211991 (+) 495 WP_286445515.1 hypothetical protein -
  QAD57_RS05705 (QAD57_05700) - 1212004..1212510 (+) 507 WP_154498225.1 helix-turn-helix domain-containing protein -
  QAD57_RS05710 (QAD57_05705) - 1212504..1213310 (+) 807 WP_220957202.1 phosphatidylserine decarboxylase -
  QAD57_RS05715 (QAD57_05710) nadA 1213297..1214307 (+) 1011 WP_120918311.1 quinolinate synthase NadA -
  QAD57_RS05720 (QAD57_05715) nadC 1214307..1215128 (+) 822 WP_286445516.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50036.87 Da        Isoelectric Point: 9.8315

>NTDB_id=817303 QAD57_RS05690 WP_286445511.1 1209278..1210591(+) (comEC/comE3) [Helicobacter pylori strain BS07]
MKDKTFQGAFELLTTPKEYLLCGVILNLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDSKSHWRHFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817303 QAD57_RS05690 WP_286445511.1 1209278..1210591(+) (comEC/comE3) [Helicobacter pylori strain BS07]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAA
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTCTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTCTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAGTTTTTTCGCCTCTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945