Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP07_RS07555 Genome accession   NZ_CP122946
Coordinates   1580901..1582214 (-) Length   437 a.a.
NCBI ID   WP_286444506.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575901..1587214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS07525 (QAP07_07525) nadC 1576372..1577193 (-) 822 WP_286444501.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QAP07_RS07530 (QAP07_07530) nadA 1577193..1578197 (-) 1005 WP_286444502.1 quinolinate synthase NadA -
  QAP07_RS07535 (QAP07_07535) - 1578187..1578990 (-) 804 WP_286444503.1 phosphatidylserine decarboxylase -
  QAP07_RS07540 (QAP07_07540) - 1578984..1579490 (-) 507 WP_220946089.1 helix-turn-helix domain-containing protein -
  QAP07_RS07545 (QAP07_07545) - 1579503..1579997 (-) 495 WP_286444504.1 hypothetical protein -
  QAP07_RS07550 (QAP07_07550) mqnP 1579990..1580874 (-) 885 WP_286444505.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP07_RS07555 (QAP07_07555) comEC/comE3 1580901..1582214 (-) 1314 WP_286444506.1 ComEC/Rec2 family competence protein Machinery gene
  QAP07_RS07560 (QAP07_07560) - 1582211..1583677 (-) 1467 WP_286444507.1 replicative DNA helicase -
  QAP07_RS07565 (QAP07_07565) - 1583688..1585088 (-) 1401 WP_286444508.1 NAD(P)H-hydrate dehydratase -
  QAP07_RS07570 (QAP07_07570) crdS 1585091..1586293 (-) 1203 WP_286445192.1 copper-sensing histidine kinase CrdS -
  QAP07_RS07575 (QAP07_07575) crdR 1586259..1586900 (-) 642 WP_286444509.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50270.27 Da        Isoelectric Point: 9.9068

>NTDB_id=817283 QAP07_RS07555 WP_286444506.1 1580901..1582214(-) (comEC/comE3) [Helicobacter pylori strain BS31]
MKDKTFQGAFELLTTLKEYLFCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=817283 QAP07_RS07555 WP_286444506.1 1580901..1582214(-) (comEC/comE3) [Helicobacter pylori strain BS31]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCTCAAAGAATACTTATTCTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTCTCTCTTTTTTATACTCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGAGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGACTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTACGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952