Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QAP07_RS04780 Genome accession   NZ_CP122946
Coordinates   1008278..1010062 (+) Length   594 a.a.
NCBI ID   WP_286443776.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003278..1015062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS04750 (QAP07_04750) motB 1003936..1004709 (+) 774 WP_001085326.1 flagellar motor protein MotB -
  QAP07_RS04755 (QAP07_04755) - 1004715..1005152 (+) 438 WP_181224892.1 hypothetical protein -
  QAP07_RS04760 (QAP07_04760) - 1005327..1006988 (+) 1662 WP_286443767.1 ABC transporter permease/substrate-binding protein -
  QAP07_RS04765 (QAP07_04765) - 1006992..1007633 (+) 642 WP_286443769.1 ATP-binding cassette domain-containing protein -
  QAP07_RS04770 (QAP07_04770) - 1007645..1007824 (-) 180 WP_000468796.1 hypothetical protein -
  QAP07_RS04775 (QAP07_04775) - 1007816..1008277 (+) 462 WP_120836089.1 hypothetical protein -
  QAP07_RS04780 (QAP07_04780) uvrC 1008278..1010062 (+) 1785 WP_286443776.1 excinuclease ABC subunit UvrC Machinery gene
  QAP07_RS04785 (QAP07_04785) - 1010073..1011338 (+) 1266 WP_286443778.1 homoserine dehydrogenase -
  QAP07_RS04790 (QAP07_04790) - 1011339..1011683 (+) 345 WP_120881581.1 YraN family protein -
  QAP07_RS04795 (QAP07_04795) trxA 1011772..1012092 (+) 321 WP_000020204.1 thioredoxin -
  QAP07_RS04800 (QAP07_04800) trxB 1012098..1013033 (+) 936 WP_286443783.1 thioredoxin-disulfide reductase -
  QAP07_RS04805 (QAP07_04805) - 1013270..1014091 (+) 822 WP_286443785.1 glycosyltransferase family 25 protein -
  QAP07_RS04810 (QAP07_04810) - 1014303..1014551 (-) 249 WP_000790557.1 RNA-binding protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68669.91 Da        Isoelectric Point: 9.6907

>NTDB_id=817279 QAP07_RS04780 WP_286443776.1 1008278..1010062(+) (uvrC) [Helicobacter pylori strain BS31]
MADLLSSLKNLSHSSGVYQYFDKNRQLLYIGKAKNLKKRIRSYFSIHNNEITPNCRASLRIQMMVKQIAFLETILVENEQ
DALILENSLIKQLKPKYNILLRDDKTYPYIYMDFSTDFPIPLITRKILKQPGVKYFGPFTSRAKDILDSLYELLPLVQKK
NCIKDKKACMFYQIERCKAPCENKITKEEYLKIAKECLEMIENKDKLIKELELKMERLSNNLRFEEALIYRDRIAKIQKI
APFTCMDLAKLYDLDIFAFYSGGNKAVLVKMFMRGGKIISSAFEKIHSLNGFDTDEAMKQAIINHYQSHLPLMPEQILLN
ACSNETLKELQDFISHQCSKKIALSIPKKGDKLALIEIAMKNAQEIFSQEKTSNEDLILEEARSLFNLECVPYRVEIFDA
SHHSNSQCVGGMVVYENHAFQKNSYRRYHLKGSNEYTQMSELLTRRALDFAKEPPPNLWVIDGGRVQLNIALEILKSSGS
FVEVIAISKEKRDSKAYRSKGGAKDIIHTPSNTFKLLPSDKRLQWVQKLRDESHRYAINFHRSTKLKNMKQIALLKEKGI
GEASVKKLLDYFGSFEAIEKASEQEKNAVLKKRN

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=817279 QAP07_RS04780 WP_286443776.1 1008278..1010062(+) (uvrC) [Helicobacter pylori strain BS31]
ATGGCTGATTTATTGTCCAGTTTGAAAAACCTTTCTCATAGCAGTGGCGTGTATCAATATTTTGATAAAAACCGCCAATT
ACTCTATATCGGTAAGGCGAAAAATTTAAAAAAGCGCATCAGAAGCTATTTTTCTATCCACAATAATGAAATCACGCCCA
ATTGTCGCGCAAGCTTACGCATCCAAATGATGGTCAAACAGATCGCTTTTTTAGAAACCATTTTAGTAGAAAACGAACAA
GACGCTTTGATTTTAGAAAATTCTTTAATCAAGCAGCTCAAACCCAAATACAACATTCTTTTGAGAGATGATAAAACTTA
CCCCTATATTTACATGGATTTTTCCACTGATTTCCCTATCCCTTTAATCACACGAAAAATTTTAAAACAGCCTGGCGTTA
AATATTTTGGCCCTTTTACGAGCAGGGCTAAGGATATTTTAGACAGCTTGTATGAATTGCTCCCGTTAGTTCAAAAGAAA
AATTGCATCAAAGATAAAAAGGCATGCATGTTTTATCAAATAGAGCGTTGTAAAGCCCCATGCGAGAATAAAATCACCAA
AGAAGAGTATTTGAAAATCGCTAAAGAATGTTTAGAAATGATTGAAAATAAAGACAAACTCATCAAAGAGCTTGAATTAA
AAATGGAGCGCCTTTCTAATAACTTGCGTTTTGAAGAAGCCCTCATTTATAGAGATAGGATTGCAAAAATCCAAAAAATC
GCCCCTTTCACTTGCATGGATTTAGCCAAACTCTATGATTTGGATATTTTTGCTTTTTATAGTGGGGGCAATAAGGCGGT
GTTAGTGAAAATGTTTATGCGTGGGGGTAAAATCATTTCTTCAGCGTTTGAAAAAATCCACTCTCTTAATGGGTTTGACA
CTGATGAAGCGATGAAACAAGCCATTATCAATCATTACCAATCGCATTTGCCTTTAATGCCAGAACAGATTTTATTGAAC
GCTTGCTCTAATGAAACGCTTAAAGAATTGCAAGATTTTATCTCTCACCAATGCTCTAAAAAAATCGCTCTTAGTATTCC
TAAAAAGGGCGATAAGCTCGCTTTAATAGAAATCGCTATGAAAAACGCTCAAGAGATTTTTAGCCAAGAAAAAACCTCTA
ATGAAGATCTGATTTTAGAAGAAGCGCGATCGCTTTTCAATTTAGAGTGCGTGCCTTATAGGGTGGAAATCTTTGATGCA
AGCCACCATTCAAACAGCCAATGCGTGGGGGGAATGGTCGTGTATGAAAATCATGCATTTCAAAAAAACTCTTATCGGCG
CTACCATTTGAAAGGCTCTAACGAATACACTCAAATGAGCGAATTGCTCACTAGAAGAGCTTTAGATTTTGCTAAAGAGC
CACCGCCTAATTTGTGGGTAATAGATGGAGGGAGGGTGCAATTAAACATCGCTTTAGAAATTTTAAAAAGCAGCGGGAGT
TTTGTAGAAGTGATCGCTATTTCTAAAGAAAAAAGGGATTCTAAAGCTTATCGTTCTAAAGGAGGCGCTAAAGACATCAT
CCATACGCCCAGCAATACTTTTAAATTGCTCCCTAGCGACAAACGCTTGCAGTGGGTGCAAAAATTGCGCGATGAAAGCC
ACCGGTATGCGATAAACTTCCACAGATCCACTAAACTTAAAAACATGAAACAAATCGCTCTTTTAAAAGAAAAGGGTATA
GGAGAAGCCAGCGTGAAAAAATTGTTGGATTATTTTGGGAGTTTTGAAGCGATAGAAAAAGCGAGCGAGCAGGAAAAAAA
CGCTGTTTTGAAAAAACGAAATTAA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(205-239)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-538)

GIY-YIG catalytic domain (GIY-YIG)

(15-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

96.459

99.832

0.963