Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   R0Q54_RS00865 Genome accession   NZ_CP136992
Coordinates   142843..144333 (-) Length   496 a.a.
NCBI ID   WP_014480148.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 137843..149333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS00835 (R0Q54_00835) gudB 137997..139271 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  R0Q54_RS00840 (R0Q54_00840) mecB 139427..140011 (-) 585 WP_003230533.1 genetic competence negative regulator -
  R0Q54_RS00845 (R0Q54_00845) ypbG 140170..140949 (-) 780 WP_014480146.1 metallophosphoesterase -
  R0Q54_RS00850 (R0Q54_00850) ypbF 141035..141478 (-) 444 WP_014480147.1 YpbF family protein -
  R0Q54_RS00855 (R0Q54_00855) claE 141541..142263 (-) 723 WP_004398603.1 LysM peptidoglycan-binding domain-containing protein -
  R0Q54_RS00860 (R0Q54_00860) ypbD 142214..142816 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  R0Q54_RS00865 (R0Q54_00865) recS 142843..144333 (-) 1491 WP_014480148.1 ATP-dependent DNA helicase RecQ Machinery gene
  R0Q54_RS00870 (R0Q54_00870) gmmB 144326..145384 (-) 1059 WP_014480149.1 helix-turn-helix domain-containing protein -
  R0Q54_RS00875 (R0Q54_00875) fdxA 145650..145898 (+) 249 WP_003225461.1 ferredoxin -
  R0Q54_RS00880 (R0Q54_00880) fmnP 145938..146510 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  R0Q54_RS00885 (R0Q54_00885) serA 147007..148584 (+) 1578 WP_046160519.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56464.09 Da        Isoelectric Point: 6.5562

>NTDB_id=817277 R0Q54_RS00865 WP_014480148.1 142843..144333(-) (recS) [Bacillus subtilis strain J46]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAVDTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYELKGARSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=817277 R0Q54_RS00865 WP_014480148.1 142843..144333(-) (recS) [Bacillus subtilis strain J46]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGTGATGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTCCTAGAAAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGGAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTCGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACTAAAAGGGGCACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992