Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP07_RS00840 Genome accession   NZ_CP122946
Coordinates   177124..177387 (+) Length   87 a.a.
NCBI ID   WP_000584953.1    Uniprot ID   A0AAV3IGW5
Organism   Helicobacter pylori strain BS31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172124..182387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS00815 (QAP07_00815) groES 172408..172764 (-) 357 WP_000671946.1 co-chaperone GroES -
  QAP07_RS00820 (QAP07_00820) dnaG 173052..174731 (+) 1680 WP_286444668.1 DNA primase -
  QAP07_RS00825 (QAP07_00825) - 174728..175780 (+) 1053 WP_286444669.1 MnmA/TRMU family protein -
  QAP07_RS00830 (QAP07_00830) - 175871..176698 (+) 828 WP_286444670.1 DUF5718 family protein -
  QAP07_RS00835 (QAP07_00835) comB2 176843..177124 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP07_RS00840 (QAP07_00840) comB3 177124..177387 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  QAP07_RS00845 (QAP07_00845) comB4 177390..179753 (+) 2364 WP_286444671.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP07_RS00855 (QAP07_00855) - 180074..181414 (+) 1341 WP_286444672.1 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=817266 QAP07_RS00840 WP_000584953.1 177124..177387(+) (comB3) [Helicobacter pylori strain BS31]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817266 QAP07_RS00840 WP_000584953.1 177124..177387(+) (comB3) [Helicobacter pylori strain BS31]
ATGATTATTCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAAAAGCAAAATAAAGACT
AAAACCAAATGTTACAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989