Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP07_RS00835 Genome accession   NZ_CP122946
Coordinates   176843..177124 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain BS31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171843..182124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS00815 (QAP07_00815) groES 172408..172764 (-) 357 WP_000671946.1 co-chaperone GroES -
  QAP07_RS00820 (QAP07_00820) dnaG 173052..174731 (+) 1680 WP_286444668.1 DNA primase -
  QAP07_RS00825 (QAP07_00825) - 174728..175780 (+) 1053 WP_286444669.1 MnmA/TRMU family protein -
  QAP07_RS00830 (QAP07_00830) - 175871..176698 (+) 828 WP_286444670.1 DUF5718 family protein -
  QAP07_RS00835 (QAP07_00835) comB2 176843..177124 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP07_RS00840 (QAP07_00840) comB3 177124..177387 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  QAP07_RS00845 (QAP07_00845) comB4 177390..179753 (+) 2364 WP_286444671.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP07_RS00855 (QAP07_00855) - 180074..181414 (+) 1341 WP_286444672.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=817265 QAP07_RS00835 WP_001272686.1 176843..177124(+) (comB2) [Helicobacter pylori strain BS31]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817265 QAP07_RS00835 WP_001272686.1 176843..177124(+) (comB2) [Helicobacter pylori strain BS31]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989