Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   QAP07_RS00010 Genome accession   NZ_CP122946
Coordinates   1597..3036 (+) Length   479 a.a.
NCBI ID   WP_286444548.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS00005 (QAP07_00005) dnaA 1..1368 (+) 1368 WP_286444547.1 chromosomal replication initiator protein DnaA -
  QAP07_RS00010 (QAP07_00010) comH 1597..3036 (+) 1440 WP_286444548.1 competence protein Machinery gene
  QAP07_RS00020 (QAP07_00020) - 3216..3968 (+) 753 WP_286444549.1 exodeoxyribonuclease III -
  QAP07_RS00025 (QAP07_00025) - 3965..4600 (-) 636 WP_286444550.1 outer membrane protein -
  QAP07_RS00030 (QAP07_00030) - 4604..4957 (-) 354 WP_220920773.1 hypothetical protein -
  QAP07_RS00035 (QAP07_00035) recG 5039..6904 (+) 1866 WP_286444551.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54805.80 Da        Isoelectric Point: 7.4804

>NTDB_id=817263 QAP07_RS00010 WP_286444548.1 1597..3036(+) (comH) [Helicobacter pylori strain BS31]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQSLDK
KLSLETTLNPNRPTISRNTQIVFSSKELKEVHAHQMPSLNAPMQKPQNKPSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPSNTPNADTNEHNESNENRDNVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSHAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFAILQAR
SSTEKCKRARVRKDGTIRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=817263 QAP07_RS00010 WP_286444548.1 1597..3036(+) (comH) [Helicobacter pylori strain BS31]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATCGTCTATCAATCTCTTGATAAA
AAACTTTCTCTAGAAACGACCTTAAACCCTAACCGCCCTACTATTTCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAAGTGCACGCACACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACCCAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACACTCCCTAGCAACACCCCTAACGCTGATACTA
ATGAACACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCCAATGTTAAAGAATTTGCG
TGCGGAAAGTGGGTTTATGACGATGAAAATTTACAAGCCTACCGCCCGAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGATATTACCCCTTGCGATTACAGCCACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAA
TCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTCGCCATTCTTCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGAGCCAGAGTGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.902

100

0.929