Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HXS59_RS14640 Genome accession   NZ_AP023224
Coordinates   3025435..3026064 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YJ1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020435..3031064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS59_RS14625 helD 3020677..3022731 (-) 2055 WP_000420536.1 DNA helicase IV -
  HXS59_RS14630 yccF 3022854..3023300 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HXS59_RS14635 yccS 3023310..3025472 (+) 2163 WP_000875023.1 YccS family putative transporter -
  HXS59_RS14640 sxy/tfoX 3025435..3026064 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HXS59_RS14645 sulA 3026283..3026792 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HXS59_RS14650 ompA 3027149..3028201 (+) 1053 WP_001361736.1 porin OmpA -
  HXS59_RS14655 matP 3028277..3028729 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HXS59_RS14660 ycbZ 3028915..3030675 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=81723 HXS59_RS14640 WP_000839153.1 3025435..3026064(-) (sxy/tfoX) [Escherichia coli strain YJ1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=81723 HXS59_RS14640 WP_000839153.1 3025435..3026064(-) (sxy/tfoX) [Escherichia coli strain YJ1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment