Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8563_RS05575 Genome accession   NZ_AP026917
Coordinates   1090912..1091982 (+) Length   356 a.a.
NCBI ID   WP_000817894.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085912..1096982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS05560 (PC0007_10860) ylqF 1087143..1087994 (+) 852 WP_000201319.1 ribosome biogenesis GTPase YlqF -
  R8563_RS05565 (PC0007_10870) - 1087981..1088760 (+) 780 WP_000201097.1 ribonuclease HII -
  R8563_RS05570 (PC0007_10880) - 1088776..1090326 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  R8563_RS05575 (PC0007_10890) xerS 1090912..1091982 (+) 1071 WP_000817894.1 tyrosine recombinase XerS Machinery gene
  R8563_RS05580 (PC0007_10900) - 1092055..1093044 (-) 990 WP_000873993.1 lipoate--protein ligase -
  R8563_RS05585 (PC0007_10910) lpdA 1093108..1094811 (-) 1704 WP_001162949.1 dihydrolipoyl dehydrogenase -
  R8563_RS05590 (PC0007_10920) - 1094857..1095900 (-) 1044 WP_000752700.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41184.25 Da        Isoelectric Point: 9.6949

>NTDB_id=81716 R8563_RS05575 WP_000817894.1 1090912..1091982(+) (xerS) [Streptococcus pneumoniae strain PZ900700007]
MKREILLERINKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAINLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=81716 R8563_RS05575 WP_000817894.1 1090912..1091982(+) (xerS) [Streptococcus pneumoniae strain PZ900700007]
ATGAAACGTGAGATTTTACTGGAACGAATCAACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTATTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCTACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment