Detailed information NTG0817100

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: R3J34_RS01805
• Genome accession: NZ_CP136975
• Coordinates: 442499..444976 (+)
• Length: 825 a.a.
• NCBI ID: WP_154415154.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8070
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 437499..449976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J34_RS01780 (R3J34_01775)	-	438612..439397 (+)	786	WP_004085195.1	succinate dehydrogenase iron-sulfur subunit	-
R3J34_RS01785 (R3J34_01780)	-	439518..439766 (+)	249	WP_004085194.1	succinate dehydrogenase assembly factor 2	-
R3J34_RS01790 (R3J34_01785)	-	439717..440169 (+)	453	WP_004089278.1	hypothetical protein	-
R3J34_RS01795 (R3J34_01790)	-	440195..441436 (+)	1242	WP_004085192.1	lipoprotein-releasing ABC transporter permease subunit	-
R3J34_RS01800 (R3J34_01795)	lolD	441429..442151 (+)	723	WP_004085191.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
R3J34_RS01805 (R3J34_01800)	comA	442499..444976 (+)	2478	WP_154415154.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
R3J34_RS01810 (R3J34_01805)	exbB	444961..445623 (+)	663	WP_004085189.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
R3J34_RS01815 (R3J34_01810)	-	445628..446065 (+)	438	WP_004089267.1	biopolymer transporter ExbD	-
R3J34_RS01820 (R3J34_01815)	msbA	446083..447831 (+)	1749	WP_004085187.1	lipid A export permease/ATP-binding protein MsbA	-
R3J34_RS01825 (R3J34_01820)	lpxK	447828..448847 (+)	1020	WP_004085186.1	tetraacyldisaccharide 4'-kinase	-

Sequence

Protein

• Length: 825 a.a.
• Molecular weight: 90722.69 Da
• Isoelectric Point: 9.3129

>NTDB_id=817100 R3J34_RS01805 WP_154415154.1 442499..444976(+) (comA) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
MDDMKPEQRHVLQRCWVDVLSVTRHATCLRYLAFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFVGVMLAVIVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSLALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KAVAPGPRSELHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRAPTMARELAAATGINAWRERMSARIAD
AVLLEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRVLPHLAWRWPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLLWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPLANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGNCFQW
SWQLFEYLAQTDFALWWLPESDGVALGLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSRYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDISKERRRNETCWNW

Nucleotide

• Length: 2478 bp

>NTDB_id=817100 R3J34_RS01805 WP_154415154.1 442499..444976(+) (comA) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
ATGGACGATATGAAACCCGAGCAGCGACACGTGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGACCCGGCACGCAAC
GTGCTTGCGTTACCTCGCGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGCTGGGTTGTCTTGCTGCACTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGTCGGAGTAATGCTCGCTGTTATCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
AGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGCACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGCGGTAGCACCGGGGCCACGCAGTGAATTGCATGCTGGATCTGTATGGCAGCTGCACGTGCGTCTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTG
CGCCGACGATGGCACGTGAGCTGGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGCGCGTATTGCTGAT
GCGGTGTTGTTGGAAGCATCGGTGTATTTACGTGCGTTGGCCTTGGGTGATACCCGGGGTTTGTCTCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGAGTTTTACCACATTTGGCGTGGCGTTGGCCGCGGCCACTCGCTATGGCACTCATTGCG
GTACCGGCCGCAGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTGAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGTCATGTCCTGGGGCTTGCCTTGCTTGTCGTACTGGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTACTGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTGGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGGAATTGTTTCCAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGGG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGTTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCAGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCTCCGGATGCTCCACTCGACGTTGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGAGGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTTTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATATATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

• Domain of unknown function (DUF4131) (DUF4131) (59-216)

• Metallo-beta-lactamase superfamily (Lactamase_B) (554-722)

• Competence protein (Competence) (253-520)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	37.59	100	0.378