Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   R3J29_RS08475 Genome accession   NZ_CP136974
Coordinates   1889029..1890939 (-) Length   636 a.a.
NCBI ID   WP_375731815.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8075     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884029..1895939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J29_RS08465 (R3J29_08460) - 1885225..1886883 (-) 1659 WP_140189504.1 phosphoethanolamine transferase -
  R3J29_RS08470 (R3J29_08465) - 1886880..1887638 (-) 759 WP_004086593.1 phosphatase PAP2 family protein -
  R3J29_RS08475 (R3J29_08470) comQ/pilQ 1889029..1890939 (-) 1911 WP_375731815.1 type IV pilus secretin PilQ Machinery gene
  R3J29_RS08480 (R3J29_08475) - 1890939..1891469 (-) 531 WP_038210666.1 pilus assembly protein PilP -
  R3J29_RS08485 (R3J29_08480) - 1891466..1892134 (-) 669 WP_004086596.1 type 4a pilus biogenesis protein PilO -
  R3J29_RS08490 (R3J29_08485) - 1892244..1892796 (-) 553 Protein_1653 PilN domain-containing protein -
  R3J29_RS08495 (R3J29_08490) pilM 1892796..1893854 (-) 1059 WP_004086598.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 636 a.a.        Molecular weight: 68783.75 Da        Isoelectric Point: 8.6901

>NTDB_id=817077 R3J29_RS08475 WP_375731815.1 1889029..1890939(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
MIDLRDRMMTLFEVLGLRFVRRIASLRVCEIWVCIAFAWCCIPGTVSAENKQAIPVAKATNAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGAVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSNVTAGSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTA
NQREGYIKQGKEIGYVTITGGVAGAQATPNVQFKEAVLELRVTQTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLNK
REINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1911 bp        

>NTDB_id=817077 R3J29_RS08475 WP_375731815.1 1889029..1890939(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
ATGATTGATTTAAGGGATAGAATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTGTTAGGCGTATAGCCTCGCTTCG
CGTATGTGAAATTTGGGTATGCATAGCTTTCGCTTGGTGTTGCATCCCAGGAACCGTATCGGCTGAAAACAAGCAAGCGA
TTCCAGTGGCTAAAGCTACCAATGCGCCACTAAGCGTTTCCAAAATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGAGCCACTCCTGACCTGCGTACGCAGGGTGGCGCCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTCTTGCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGCTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTCCGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAATCTCAATATTGTTGCTTCCGACACTGTGCAAGGTAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCACTGACAGAAGCCAAAGGTATGGGTGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGCGATATTCCGAAGAAAGTTGCGCAAATGCGTACTCTTATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTCGGTGTTGGTGCT
GCTAGTCGTTTCAGCGATAACACTGCAACGATCGGTAGTAATGTGACTGCTGGCAGCTCCACATCGGCTACGCGGGGGCT
TAATGTTGATTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTAAAT
TTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACTGCA
AACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGCTCAAGC
CACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCAAACGATCACCAATGACAACCGTGTGTTTC
TCAACATGACTGTCAAGAAGGACGAGATCGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAACAAG
CGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCGTAA
TAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAACAAA
AGGCCGAGCTTTTGATTTTCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCGGTGCATTGA

Domains

Predicted by InterProScan.

Secretin and TonB N terminus short domain (STN)

(222-268)

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)

Bacterial type II and III secretion system protein (Secretin)

(462-627)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

39.562

93.396

0.369