Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R3J29_RS08445 | Genome accession | NZ_CP136974 |
| Coordinates | 1878548..1881133 (-) | Length | 861 a.a. |
| NCBI ID | WP_011098208.1 | Uniprot ID | Q87AX8 |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8075 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1873548..1886133
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J29_RS08425 (R3J29_08420) | - | 1874339..1874491 (-) | 153 | WP_155115079.1 | hypothetical protein | - |
| R3J29_RS08430 (R3J29_08425) | - | 1875059..1877104 (-) | 2046 | WP_038210678.1 | TonB-dependent receptor | - |
| R3J29_RS08435 (R3J29_08430) | - | 1877279..1877689 (+) | 411 | WP_004086588.1 | MerC domain-containing protein | - |
| R3J29_RS08440 (R3J29_08435) | - | 1877814..1877996 (+) | 183 | WP_004086643.1 | 30S ribosomal protein THX | - |
| R3J29_RS08445 (R3J29_08440) | clpC | 1878548..1881133 (-) | 2586 | WP_011098208.1 | ATP-dependent chaperone ClpB | Regulator |
| R3J29_RS08450 (R3J29_08445) | - | 1881643..1881873 (-) | 231 | WP_071869604.1 | rubredoxin | - |
| R3J29_RS08455 (R3J29_08450) | thiE | 1881908..1882522 (+) | 615 | WP_038210674.1 | thiamine phosphate synthase | - |
| R3J29_RS08460 (R3J29_08455) | - | 1883395..1884603 (+) | 1209 | WP_140162003.1 | cytochrome P450 | - |
Sequence
Protein
Download Length: 861 a.a. Molecular weight: 95648.31 Da Isoelectric Point: 5.3076
>NTDB_id=817076 R3J29_RS08445 WP_011098208.1 1878548..1881133(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILAGAFVSGDTVQVGVDGGKLVFSKV
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQDEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILAGAFVSGDTVQVGVDGGKLVFSKV
Nucleotide
Download Length: 2586 bp
>NTDB_id=817076 R3J29_RS08445 WP_011098208.1 1878548..1881133(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
ATGCGGATGGATAAGCTTACTTCGCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGTATTGCTTGATCAGCAGGGGGGGAGCACACGTCCGTTGCTCGTGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGTGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGCGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGTGGTGAAACTGTCCAGACTGAGAATGCGGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGTGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGGCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCCGAGGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGCTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGTCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCAATCGAG
CAGGCCAAGCTTGATTTGGAAGCTGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCCTTGGAGAAGCAGCTAGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACTTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTCAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGTCGACGTGTGGTTGGTCAAGATGAGGCGATCAAGGTGGTATCGGATGCGGTGCGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAA
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACTGTTATTGTGATGACATCAAACTTA
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGGGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCGGGGGCTAGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGCTGGAATTGCTTGGTAATGTCGGATTTGATCCTGTATATGGTGCCCGCCCGCTGAAGAGAGCAATCCAATCTCA
GCTGGAGAATGCCTTAGCGCAGCAGATCTTAGCTGGAGCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCTCTAAGGTGTGA
ATGCGGATGGATAAGCTTACTTCGCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGTATTGCTTGATCAGCAGGGGGGGAGCACACGTCCGTTGCTCGTGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGTGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGCGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGTGGTGAAACTGTCCAGACTGAGAATGCGGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGTGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGGCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCCGAGGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGCTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGTCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCAATCGAG
CAGGCCAAGCTTGATTTGGAAGCTGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCCTTGGAGAAGCAGCTAGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACTTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTCAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGTCGACGTGTGGTTGGTCAAGATGAGGCGATCAAGGTGGTATCGGATGCGGTGCGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAA
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACTGTTATTGTGATGACATCAAACTTA
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGGGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCGGGGGCTAGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGCTGGAATTGCTTGGTAATGTCGGATTTGATCCTGTATATGGTGCCCGCCCGCTGAAGAGAGCAATCCAATCTCA
GCTGGAGAATGCCTTAGCGCAGCAGATCTTAGCTGGAGCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCTCTAAGGTGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.675 |
100 |
0.46 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
41.582 |
100 |
0.427 |
| clpE | Streptococcus mutans UA159 |
48.763 |
79.791 |
0.389 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.399 |
80.372 |
0.381 |
| clpE | Streptococcus pneumoniae R6 |
47.399 |
80.372 |
0.381 |
| clpE | Streptococcus pneumoniae Rx1 |
47.399 |
80.372 |
0.381 |
| clpE | Streptococcus pneumoniae D39 |
47.399 |
80.372 |
0.381 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.33 |
80.488 |
0.381 |