Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R3J29_RS03625 Genome accession   NZ_CP136974
Coordinates   822727..824070 (-) Length   447 a.a.
NCBI ID   WP_375732024.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8075     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 817727..829070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J29_RS03600 (R3J29_03590) - 819266..819535 (-) 270 WP_004089222.1 HPr family phosphocarrier protein -
  R3J29_RS03605 (R3J29_03595) - 819528..819920 (-) 393 WP_004083781.1 PTS sugar transporter subunit IIA -
  R3J29_RS03610 (R3J29_03600) rapZ 820291..821163 (-) 873 WP_004083780.1 RNase adapter RapZ -
  R3J29_RS03615 (R3J29_03605) hprK 821160..822110 (-) 951 WP_004083779.1 HPr(Ser) kinase/phosphatase -
  R3J29_RS03620 (R3J29_03610) hpf 822376..822693 (-) 318 WP_004083778.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R3J29_RS03625 (R3J29_03615) rpoN/rpoN1 822727..824070 (-) 1344 WP_375732024.1 RNA polymerase factor sigma-54 Machinery gene
  R3J29_RS03630 (R3J29_03620) lptB 824160..824882 (-) 723 WP_020850896.1 LPS export ABC transporter ATP-binding protein -
  R3J29_RS03635 (R3J29_03625) lptA 824882..825412 (-) 531 WP_004083775.1 lipopolysaccharide transport periplasmic protein LptA -
  R3J29_RS03640 (R3J29_03630) lptC 825390..825959 (-) 570 WP_004083774.1 LPS export ABC transporter periplasmic protein LptC -
  R3J29_RS03645 (R3J29_03635) - 825956..826504 (-) 549 WP_004083773.1 HAD family hydrolase -
  R3J29_RS03650 (R3J29_03640) - 826522..827523 (-) 1002 WP_375731979.1 KpsF/GutQ family sugar-phosphate isomerase -
  R3J29_RS03655 (R3J29_03645) - 827585..827812 (+) 228 WP_004083771.1 BolA family protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49624.34 Da        Isoelectric Point: 6.2962

>NTDB_id=817054 R3J29_RS03625 WP_375732024.1 822727..824070(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
MTPQLHQSIRLLQMSNAELQLEITAAIESNPLLDWAENQSSETSEATEREVETEDWQAKESAWDINGSKSNENDDNNPAE
RLTTGNTLTDHLLWQLHLSPLSARDYQIGTVLIDAIEEDGYLREPLSTLTATITPLSVDESELLPVLRHIQSFDPTGVAA
RSLAECLTLQLKSLREAIPGRTLALQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLDPRPGKKIGDLEVGT
YVIPDCVIWRQHGLWQAKLLGHGFPQVVLHRGYEQLINRCNDANASYLRNQLQEARWLLKGLEARGETLLKVVNSLIRHQ
AGFLEFGQHALRPLTIRELATELALHESTVSRAIAGKYVRTPRGTLALRTFFASGISTDSGGETSSSAIQAIIRRLIETE
NPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAMNISASHERVRVLG

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=817054 R3J29_RS03625 WP_375732024.1 822727..824070(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
ATGACACCCCAGCTACACCAAAGCATCCGTCTGCTGCAAATGTCCAACGCCGAATTGCAACTGGAAATCACCGCAGCGAT
AGAGAGCAATCCACTCTTGGACTGGGCCGAGAACCAATCATCGGAGACCAGCGAAGCTACCGAAAGGGAAGTAGAAACAG
AAGATTGGCAGGCCAAGGAGTCGGCCTGGGATATCAACGGCAGTAAAAGCAACGAAAATGACGACAACAACCCTGCTGAA
CGTCTGACCACCGGGAACACTCTCACTGATCACTTGCTGTGGCAACTGCACCTCTCCCCACTGTCAGCACGTGATTACCA
AATAGGCACCGTCTTGATTGATGCCATAGAAGAAGATGGTTACCTGCGTGAACCTTTATCCACACTGACTGCAACCATAA
CCCCGTTATCTGTAGATGAAAGCGAACTGCTACCAGTATTACGACACATTCAATCTTTTGACCCGACCGGCGTAGCTGCA
CGCTCGCTGGCCGAGTGCTTGACGCTGCAACTGAAATCATTGAGAGAAGCGATACCCGGACGCACACTTGCACTGCAGAT
TGTCAACAGCCCACTGCTCGAACAATTGCCCCGCAGTGGTGTCACCGGACTGGCGCGCGAACTGAAACGACCCTCCCAAG
ACGTCCAACAGGCAGTGGAATTGATCCGTGGACTGGACCCTCGCCCAGGTAAGAAAATTGGCGACTTAGAAGTTGGAACC
TACGTTATACCGGACTGTGTGATCTGGCGCCAACATGGGCTGTGGCAAGCTAAGCTGTTGGGACATGGATTCCCACAAGT
CGTCCTACACCGCGGCTACGAACAGCTCATCAACCGCTGCAATGACGCCAATGCGAGCTACCTACGCAACCAACTCCAAG
AAGCACGATGGCTGCTCAAGGGCCTGGAAGCACGCGGTGAAACTTTGTTAAAGGTGGTAAACAGCCTCATACGTCACCAA
GCGGGATTCTTGGAATTCGGCCAGCACGCGTTACGTCCATTGACTATCCGCGAATTAGCAACGGAACTTGCCCTGCATGA
ATCCACCGTATCCCGTGCAATTGCTGGCAAGTATGTACGCACCCCACGTGGCACCTTAGCGCTACGCACCTTTTTCGCTT
CAGGAATCAGCACCGACAGCGGCGGAGAGACCTCCAGCTCTGCCATTCAAGCAATCATCAGACGTCTCATAGAAACTGAA
AACCCCCGCAAGCCACTCTCTGACGCCAAACTAGCTGAATTGCTGAAGACATCCGGTATTCCAGTAGCGCGACGCACCAT
AGCAAAGTATCGTGATGCTATGAACATCTCCGCATCCCACGAACGCGTCCGAGTCCTAGGATGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(1-34)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(80-273)

Sigma-54, DNA binding domain (Sigma54_DBD)

(286-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

37.654

100

0.409