Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R3J29_RS01895 Genome accession   NZ_CP136974
Coordinates   453254..453916 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8075     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448254..458916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J29_RS01880 (R3J29_01875) - 448488..449729 (+) 1242 WP_004085192.1 lipoprotein-releasing ABC transporter permease subunit -
  R3J29_RS01885 (R3J29_01880) lolD 449722..450444 (+) 723 WP_038230153.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  R3J29_RS01890 (R3J29_01885) comA 450792..453269 (+) 2478 WP_071869475.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R3J29_RS01895 (R3J29_01890) exbB 453254..453916 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R3J29_RS01900 (R3J29_01895) - 453921..454358 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  R3J29_RS01905 (R3J29_01900) msbA 454376..456124 (+) 1749 WP_004085187.1 lipid A export permease/ATP-binding protein MsbA -
  R3J29_RS01910 (R3J29_01905) lpxK 456121..457140 (+) 1020 WP_004085186.1 tetraacyldisaccharide 4'-kinase -
  R3J29_RS01915 (R3J29_01910) - 457515..458597 (-) 1083 WP_375731933.1 phage late control D family protein -
  R3J29_RS01920 (R3J29_01915) - 458588..458806 (-) 219 WP_027700430.1 tail protein X -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=817043 R3J29_RS01895 WP_004085189.1 453254..453916(+) (exbB) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=817043 R3J29_RS01895 WP_004085189.1 453254..453916(+) (exbB) [Xylella fastidiosa subsp. multiplex strain CFBP8075]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTATGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441