Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   R3J36_RS00440 Genome accession   NZ_CP136973
Coordinates   116656..117291 (+) Length   211 a.a.
NCBI ID   WP_027700370.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8068     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111656..122291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J36_RS00430 (R3J36_00430) - 113354..114382 (-) 1029 WP_004085534.1 right-handed parallel beta-helix repeat-containing protein -
  R3J36_RS00435 (R3J36_00435) - 115152..116183 (+) 1032 WP_004085533.1 nitronate monooxygenase family protein -
  R3J36_RS00440 (R3J36_00440) dinR/lexA 116656..117291 (+) 636 WP_027700370.1 transcriptional repressor LexA Regulator
  R3J36_RS00445 (R3J36_00445) recA 117473..118516 (+) 1044 WP_027700369.1 recombinase RecA Machinery gene
  R3J36_RS00450 (R3J36_00450) alaS 119005..121659 (+) 2655 WP_027700368.1 alanine--tRNA ligase -
  R3J36_RS00455 (R3J36_00455) csrA 121798..122013 (+) 216 WP_004085529.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23331.79 Da        Isoelectric Point: 6.6096

>NTDB_id=816978 R3J36_RS00440 WP_027700370.1 116656..117291(+) (dinR/lexA) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
MSLSDIQQAILSLITKNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLEQQGMIRRVPGQARGIRLKHLTEVDEVALAL
HSKDVLRLPVLGRVAAGQPIGADIGEDHVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQDAHSGQIVVAR
IDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIEGLYCGLLRPNR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=816978 R3J36_RS00440 WP_027700370.1 116656..117291(+) (dinR/lexA) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
ATGAGTTTGAGCGATATTCAGCAGGCAATCCTGTCATTGATTACCAAAAACATCAACGCTGATGGCGTTTCTCCTTCGCA
GACGGAGATCGCGCGTGCATTCGGCTTCAAAGGGGTTCGCGCGGTGCAGCATCACCTTGATGTATTGGAGCAACAGGGGA
TGATTCGCCGCGTCCCTGGACAGGCGCGTGGCATCCGGTTGAAGCATCTTACTGAGGTGGATGAGGTTGCGTTAGCTTTG
CATAGTAAGGATGTGTTGCGCTTGCCAGTGCTCGGTCGCGTTGCGGCTGGTCAGCCGATCGGTGCTGATATCGGTGAGGA
TCACGTGGTGTTGTTGGATCGTGTGTTCTTCTCCCCAGCACCGGATTATCTGTTGAGGGTGCAAGGTGATTCGATGCGCG
ATGAAGGAATTTTCGATGGTGATTTGATCGGCGTACATCGTACGCAGGATGCGCATTCTGGGCAAATTGTGGTGGCGCGC
ATTGATGATGAGATTACCGTCAAATTGTTGAAGATCAGTAAAGACCGGATTCGTTTGCTACCGCGTAATCCTGACTTTGC
ACCGATTGAGGTGAGGTCAGATCAGGATTTCGCCATTGAGGGATTGTATTGCGGTTTGCTGCGCCCCAACCGGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-64)

Peptidase S24-like (Peptidase_S24)

(89-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.019

98.578

0.365