Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R3J35_RS09275 | Genome accession | NZ_CP136972 |
| Coordinates | 1994814..1997399 (-) | Length | 861 a.a. |
| NCBI ID | WP_027700183.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8173 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1989814..2002399
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R3J35_RS09255 (R3J35_09235) | - | 1990613..1990765 (-) | 153 | WP_154123934.1 | hypothetical protein | - |
| R3J35_RS09260 (R3J35_09240) | - | 1991333..1993378 (-) | 2046 | WP_004086587.1 | TonB-dependent receptor | - |
| R3J35_RS09265 (R3J35_09245) | - | 1993553..1993963 (+) | 411 | WP_004086588.1 | MerC domain-containing protein | - |
| R3J35_RS09270 (R3J35_09250) | - | 1994088..1994270 (+) | 183 | WP_004086643.1 | 30S ribosomal protein THX | - |
| R3J35_RS09275 (R3J35_09255) | clpC | 1994814..1997399 (-) | 2586 | WP_027700183.1 | ATP-dependent chaperone ClpB | Regulator |
| R3J35_RS09280 (R3J35_09260) | - | 1997909..1998139 (-) | 231 | WP_162852410.1 | rubredoxin | - |
| R3J35_RS09285 (R3J35_09265) | thiE | 1998174..1998788 (+) | 615 | WP_004086590.1 | thiamine phosphate synthase | - |
| R3J35_RS09290 (R3J35_09270) | - | 1999663..2000871 (+) | 1209 | WP_004086591.1 | cytochrome P450 | - |
Sequence
Protein
Download Length: 861 a.a. Molecular weight: 95644.32 Da Isoelectric Point: 5.3088
>NTDB_id=816957 R3J35_RS09275 WP_027700183.1 1994814..1997399(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAGAFVSGDTVQVGVDGGKLVFAKV
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSVLLDQQGGSTRPLLVQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAGAFVSGDTVQVGVDGGKLVFAKV
Nucleotide
Download Length: 2586 bp
>NTDB_id=816957 R3J35_RS09275 WP_027700183.1 1994814..1997399(-) (clpC) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
ATGCGGATGGATAAGCTTACTTCGCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGTATTGCTTGATCAGCAGGGGGGGAGCACACGTCCGTTGCTCGTGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGTGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGCGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGTGGTGAAACTGTCCAGACTGAGAATGCTGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGTGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGGCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCCGAGGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGTTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGCCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCGATCGAG
CAGGCCAAGCTTGATTTGGAAGCCGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCGTTGGAGAAGCAGCTGGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACTTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTTAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGTCGACGTGTGGTTGGTCAAGAGGAGGCGATCAAGGTGGTATCGGATGCGGTGCGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAA
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACTGTTATTGTGATGACATCAAACTTA
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGGGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCGGGGGCTAGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGCTGGAATTGCTTGGTAATGTCGGATTTGATCCCGTATATGGTGCCCGCCCGCTGAAGAGAGCAATCCAATCTCA
GCTGGAGAATCCCTTAGCGCAGCAGATCTTAGCTGGAGCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCGCTAAGGTGTGA
ATGCGGATGGATAAGCTTACTTCGCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGTATTGCTTGATCAGCAGGGGGGGAGCACACGTCCGTTGCTCGTGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGTGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGCGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGTGGTGAAACTGTCCAGACTGAGAATGCTGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGTGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGGCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCCGAGGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGTTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGCCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCGATCGAG
CAGGCCAAGCTTGATTTGGAAGCCGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCGTTGGAGAAGCAGCTGGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACTTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTTAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGTCGACGTGTGGTTGGTCAAGAGGAGGCGATCAAGGTGGTATCGGATGCGGTGCGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAA
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACTGTTATTGTGATGACATCAAACTTA
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGGGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCGGGGGCTAGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGCTGGAATTGCTTGGTAATGTCGGATTTGATCCCGTATATGGTGCCCGCCCGCTGAAGAGAGCAATCCAATCTCA
GCTGGAGAATCCCTTAGCGCAGCAGATCTTAGCTGGAGCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCGCTAAGGTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
45.559 |
100 |
0.459 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
42.034 |
100 |
0.432 |
| clpE | Streptococcus mutans UA159 |
48.617 |
79.791 |
0.388 |
| clpE | Streptococcus pneumoniae TIGR4 |
47.688 |
80.372 |
0.383 |
| clpE | Streptococcus pneumoniae R6 |
47.688 |
80.372 |
0.383 |
| clpE | Streptococcus pneumoniae Rx1 |
47.688 |
80.372 |
0.383 |
| clpE | Streptococcus pneumoniae D39 |
47.688 |
80.372 |
0.383 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
47.619 |
80.488 |
0.383 |