Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R3J35_RS07635 Genome accession   NZ_CP136972
Coordinates   1674589..1677504 (+) Length   971 a.a.
NCBI ID   WP_004085953.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1669589..1682504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J35_RS07610 (R3J35_07590) murJ 1670309..1671919 (-) 1611 WP_038283983.1 murein biosynthesis integral membrane protein MurJ -
  R3J35_RS07615 (R3J35_07595) rpsT 1672019..1672288 (+) 270 WP_010894866.1 30S ribosomal protein S20 -
  R3J35_RS07620 (R3J35_07600) obgE 1672402..1673475 (-) 1074 WP_004085947.1 GTPase ObgE -
  R3J35_RS07625 (R3J35_07605) rpmA 1673650..1673907 (-) 258 WP_004085949.1 50S ribosomal protein L27 -
  R3J35_RS07630 (R3J35_07610) rplU 1673931..1674251 (-) 321 WP_027700257.1 50S ribosomal protein L21 -
  R3J35_RS07635 (R3J35_07615) uvrA 1674589..1677504 (+) 2916 WP_004085953.1 excinuclease ABC subunit UvrA Machinery gene
  R3J35_RS07640 (R3J35_07620) - 1677612..1678547 (-) 936 WP_051247978.1 hypothetical protein -
  R3J35_RS07645 (R3J35_07625) guaA 1678779..1680347 (-) 1569 WP_027700259.1 glutamine-hydrolyzing GMP synthase -
  R3J35_RS07650 (R3J35_07630) guaB 1680585..1682042 (-) 1458 WP_004085959.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 971 a.a.        Molecular weight: 107704.87 Da        Isoelectric Point: 6.9556

>NTDB_id=816950 R3J35_RS07635 WP_004085953.1 1674589..1677504(+) (uvrA) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
MTALIRIRGARTHNLKNLNLDLPRNTLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDLDQIEGL
SPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDHHYPLEAQTVSQMVDHVLTLDPEQRYMLLAPVVRERK
GEHTQVFEQLRAQGFVRVRVDGELYEIDAVPTLTLRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGNGMASVQTLDT
TTTTPHLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPACNGLGVTEFFDPAKVVIHPDLSLSAGAVRGWDRRNAYYFQ
LIASLAKHYTFDIDASWESLPEEIRHTILFGSGDEQINFTYLTEAGGRTKRKHRFEGIVPNLERRYRETESAAVREELAK
YVSTRTCPECGGTRLNRAARNVFVADRTLPELTVLPINDALEFFKTLRLPGWRGEIAIKIVKEIGERLGFLVDVGLDYLT
LERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRQADHILD
IGPGAGVHGGEICAQGSLEQIMAAPRSLTGQYLSGRRRIEIPKQRHPPNATKMLHLRGACGNNLKGVNLDIPEGLFTCIT
GVSGSGKSTLINDTLFTLAANEINGASHPIAPYASVDGLELFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE
ARARGYSPGRFSFNVRGGRCEACEGDGLIKVEMHFLPDVYVPCDVCQGKRYNRETLEIRYKGYNINDVLEMTVEDALKLF
EAVPAIARKLETLVDVGLSYLKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFYDIEALLAVLHKLRD
AGNTVIVIEHNLDVIKTADWVIDLGPEGGGRGGEILVAGTPEAVAAHPHSHTGHFLAKLLPPKDVSNCGLIGTLEKRLTL
HKRYTVREHPR

Nucleotide


Download         Length: 2916 bp        

>NTDB_id=816950 R3J35_RS07635 WP_004085953.1 1674589..1677504(+) (uvrA) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
GTGACGGCCCTCATCCGTATCCGCGGCGCGCGGACACACAACCTTAAGAATCTGAATCTTGACCTACCGCGTAACACACT
GATCGTCATTACCGGCCTCTCCGGCTCTGGCAAATCATCGTTGGCTTTTGACACGATCTACGCTGAAGGTCAGCGGCGCT
ATGTCGAATCACTATCGGCCTACGCGCGGCAGTTTTTAAGCGTGATGGAAAAGCCGGATCTGGACCAGATTGAAGGGCTG
TCTCCGGCTATTTCAATTGAACAAAAGTCAACCTCGCATAATCCCCGCTCCACCGTCGGTACGATCACCGAGATCTACGA
TTATTTGCGTCTGCTGTATGCACGTGTCGGACAACCGCGCTGCCCGGACCATCATTACCCGCTGGAAGCACAAACAGTGA
GCCAGATGGTGGATCACGTATTGACCTTGGATCCAGAGCAGCGCTACATGCTGTTGGCACCTGTGGTACGTGAGCGCAAG
GGTGAACATACCCAAGTGTTCGAACAACTGCGTGCACAAGGCTTTGTGCGCGTGCGCGTGGATGGCGAACTGTATGAGAT
CGACGCGGTGCCAACACTGACACTGCGTCAGAAGCATACGATTGAAGCGGTCATTGACCGTTTTCGCCCACGTGAAGACA
TCAAGCAACGTTTGGCGGAAAGCTTTGAAACTGCATTGAAGTTGGGCAACGGGATGGCTTCGGTCCAAACGCTGGACACA
ACAACAACCACACCACACCTGTTTTCCTCTAAGTACTCCTGTCCAGTATGCGATTATTCGCTACCGGAATTAGAGCCACG
GTTGTTCTCCTTCAACGCCCCGATGGGGGCGTGCCCCGCGTGCAACGGTCTGGGAGTCACCGAGTTTTTCGACCCGGCCA
AGGTCGTCATACATCCAGATCTTTCACTGTCAGCTGGTGCTGTGCGTGGTTGGGACCGCCGCAACGCTTACTATTTTCAA
TTGATCGCTTCGCTCGCCAAGCACTATACGTTCGACATTGACGCATCATGGGAATCGCTCCCTGAAGAAATCCGTCATAC
CATCCTGTTCGGCAGTGGCGATGAGCAGATCAACTTCACCTATTTGACGGAAGCTGGAGGGCGTACCAAGCGCAAGCATC
GCTTTGAAGGCATTGTGCCGAACCTAGAGCGCCGCTACCGTGAGACAGAATCCGCTGCCGTACGTGAGGAACTGGCCAAG
TACGTCAGTACGCGGACCTGCCCGGAGTGCGGCGGCACACGTCTGAACCGCGCCGCACGCAATGTATTTGTTGCCGATCG
GACGCTCCCTGAGCTGACAGTGCTGCCAATTAATGACGCATTGGAATTCTTCAAAACGCTACGCCTGCCAGGCTGGCGTG
GTGAGATCGCAATTAAAATTGTCAAAGAAATCGGGGAGCGTCTCGGCTTCCTGGTCGATGTTGGTCTGGACTACCTAACA
TTGGAGCGTAAGGCCGACACCCTCTCTGGTGGTGAAGCACAACGTATCCGCCTAGCGAGTCAGATCGGTGCTGGTCTAGT
GGGAGTGATGTATGTGCTGGACGAACCCTCCATCGGATTGCACCAGCGTGATAACGAACGCCTGCTCGGTACACTAACTC
GGTTGCGCGACCTTGGTAATACGGTGATTGTCGTTGAACACGACGAGGACGCCATCCGCCAAGCCGACCATATTCTCGAC
ATTGGTCCCGGTGCCGGTGTGCATGGTGGTGAGATCTGTGCTCAGGGGTCGTTGGAACAGATTATGGCCGCGCCGCGCTC
CTTGACTGGCCAATACTTATCCGGTCGACGCCGGATTGAAATCCCCAAACAGCGCCACCCCCCCAACGCCACGAAGATGC
TGCACCTACGCGGCGCCTGCGGTAATAACCTTAAAGGCGTTAATCTTGACATCCCTGAGGGTCTGTTTACTTGCATTACT
GGGGTGTCCGGCTCCGGTAAATCGACGCTCATCAACGACACGTTGTTTACGTTAGCCGCAAACGAGATCAATGGTGCTTC
TCATCCCATTGCGCCGTATGCGTCAGTCGATGGTCTAGAGCTGTTCGACAAAGTGGTAGACATTGATCAATCACCGATCG
GACGCACGCCACGCTCCAACCCAGCAACCTACACTGGCATGTTCACCCCGTTACGCGAGCTCTTTGCGCAGGTTCCGGAG
GCGCGCGCGCGCGGTTATTCTCCAGGACGTTTCAGCTTCAACGTGCGCGGTGGGCGCTGTGAAGCGTGTGAGGGCGACGG
GCTGATTAAGGTTGAAATGCACTTTTTACCCGACGTCTACGTGCCATGCGATGTATGTCAAGGCAAACGTTACAACCGTG
AGACGCTGGAAATACGATACAAGGGATATAACATCAACGACGTGCTGGAGATGACCGTTGAAGATGCCTTAAAACTGTTT
GAAGCAGTACCAGCAATTGCACGCAAGCTGGAAACTTTGGTAGATGTAGGCTTGAGCTACCTCAAACTCGGCCAGAGTGC
GACGACGCTATCAGGCGGTGAGGCGCAGCGTGTCAAATTGTCCAAAGAGCTGTCACGACGCGACACCGGACGCACGCTGT
ATATCCTTGACGAACCAACCACTGGGCTGCATTTTTACGACATTGAAGCGCTGCTGGCAGTACTGCACAAACTGCGCGAT
GCAGGGAATACGGTCATCGTGATTGAGCATAATTTAGATGTGATCAAAACGGCGGATTGGGTCATTGATCTCGGCCCGGA
GGGAGGCGGACGCGGTGGTGAAATCCTGGTGGCCGGCACTCCTGAAGCGGTGGCTGCGCATCCTCACTCGCATACTGGCC
ACTTCTTAGCCAAGCTGTTACCTCCTAAGGATGTATCCAACTGCGGTCTCATCGGAACCCTAGAGAAGAGGTTGACATTG
CACAAACGGTACACCGTTAGAGAACATCCACGATGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-400)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.851

96.807

0.541
  uvrA Streptococcus pneumoniae TIGR4

55.851

96.807

0.541
  uvrA Streptococcus pneumoniae D39

55.851

96.807

0.541