Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   R3J35_RS05745 Genome accession   NZ_CP136972
Coordinates   1280555..1281946 (+) Length   463 a.a.
NCBI ID   WP_027700018.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275555..1286946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J35_RS05725 (R3J35_05715) - 1276080..1276622 (+) 543 WP_004090677.1 Dps family protein -
  R3J35_RS05730 (R3J35_05720) recQ 1276802..1278604 (+) 1803 WP_012337750.1 DNA helicase RecQ Machinery gene
  R3J35_RS05735 (R3J35_05725) - 1278727..1279206 (+) 480 WP_004083818.1 hypothetical protein -
  R3J35_RS05740 (R3J35_05730) - 1279407..1280372 (-) 966 WP_027700017.1 LLM class flavin-dependent oxidoreductase -
  R3J35_RS05745 (R3J35_05735) radA/sms 1280555..1281946 (+) 1392 WP_027700018.1 DNA repair protein RadA Machinery gene
  R3J35_RS05750 (R3J35_05740) trpA 1282187..1282993 (-) 807 WP_004083823.1 tryptophan synthase subunit alpha -
  R3J35_RS05755 (R3J35_05745) trpB 1283119..1284336 (-) 1218 WP_004083824.1 tryptophan synthase subunit beta -
  R3J35_RS05760 (R3J35_05750) - 1284816..1285478 (-) 663 WP_027700019.1 phosphoribosylanthranilate isomerase -
  R3J35_RS05765 (R3J35_05755) truA 1285475..1286245 (-) 771 WP_024749251.1 tRNA pseudouridine(38-40) synthase TruA -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49423.77 Da        Isoelectric Point: 7.8835

>NTDB_id=816947 R3J35_RS05745 WP_027700018.1 1280555..1281946(+) (radA/sms) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGIWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPTLYVTGEESLAQVAGRAVRLDLSLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESCSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKRAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=816947 R3J35_RS05745 WP_027700018.1 1280555..1281946(+) (radA/sms) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCATCTGGAATTGCTTAAGCCAAATCACCCTCGGAAATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCACCCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGACGTGCGGTGCGCCTGGATCTGTCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAGCACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGCGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCTGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAACCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGTACACGCCCCCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTGACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTTGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAACGCGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)

AAA domain (AAA_25)

(91-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.633

98.92

0.451
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421