Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   R3J35_RS04405 Genome accession   NZ_CP136972
Coordinates   957964..958380 (-) Length   138 a.a.
NCBI ID   WP_004085459.1    Uniprot ID   B2I4N3
Organism   Xylella fastidiosa subsp. multiplex strain CFBP8173     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 952964..963380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J35_RS04395 (R3J35_04385) - 955335..957377 (-) 2043 WP_027700702.1 methyl-accepting chemotaxis protein -
  R3J35_RS04400 (R3J35_04390) - 957417..957947 (-) 531 WP_004085458.1 chemotaxis protein CheW -
  R3J35_RS04405 (R3J35_04395) pilG 957964..958380 (-) 417 WP_004085459.1 PleD family two-component system response regulator Regulator
  R3J35_RS04410 (R3J35_04400) gshB 958636..959580 (+) 945 WP_027700701.1 glutathione synthase -
  R3J35_RS04415 (R3J35_04405) - 959582..960457 (+) 876 WP_004085461.1 energy transducer TonB -
  R3J35_RS04420 (R3J35_04410) - 960709..961575 (+) 867 WP_004085403.1 DUF6216 family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15325.02 Da        Isoelectric Point: 9.7976

>NTDB_id=816937 R3J35_RS04405 WP_004085459.1 957964..958380(-) (pilG) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
MIKSVASGKELAGLRVMVIDDSKTIRRTAETLLKREGCEVVTAIDGFEALAKIADQKSQIIFVDIMMPRLDGYQTCALIK
NNNLFKSTPVIMLSSKDGLFDKARGRVVGSEQYLTKPFTREELLSAIRTYVNPLKLAV

Nucleotide


Download         Length: 417 bp        

>NTDB_id=816937 R3J35_RS04405 WP_004085459.1 957964..958380(-) (pilG) [Xylella fastidiosa subsp. multiplex strain CFBP8173]
ATGATTAAAAGTGTTGCTAGCGGCAAGGAACTCGCAGGTCTTAGGGTGATGGTCATCGATGACTCAAAAACCATAAGACG
TACCGCTGAAACGCTTCTTAAGCGTGAAGGGTGTGAGGTGGTTACCGCTATTGATGGCTTTGAAGCCTTAGCGAAAATTG
CTGATCAGAAGTCGCAGATTATTTTTGTCGATATTATGATGCCGCGCTTGGATGGTTATCAAACTTGCGCGTTGATAAAA
AACAATAACTTGTTTAAGTCGACTCCAGTGATCATGCTTTCATCTAAAGATGGCTTATTCGATAAGGCGCGCGGTCGTGT
GGTTGGTTCCGAACAATATCTGACCAAACCTTTTACACGCGAGGAGTTGTTAAGTGCCATCCGTACATATGTTAATCCTT
TAAAATTAGCTGTTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I4N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.77

88.406

0.652