Detailed information NTG0816896

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R3J28_RS09290
• Genome accession: NZ_CP136971
• Coordinates: 1995435..1998020 (-)
• Length: 861 a.a.
• NCBI ID: WP_004086589.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Santa29b
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1990435..2003020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J28_RS09270 (R3J28_09245)	-	1991229..1991381 (-)	153	WP_154123934.1	hypothetical protein	-
R3J28_RS09275 (R3J28_09250)	-	1991949..1993994 (-)	2046	WP_004086587.1	TonB-dependent receptor	-
R3J28_RS09280 (R3J28_09255)	-	1994169..1994579 (+)	411	WP_004086588.1	MerC domain-containing protein	-
R3J28_RS09285 (R3J28_09260)	-	1994704..1994886 (+)	183	WP_004086643.1	30S ribosomal protein THX	-
R3J28_RS09290 (R3J28_09265)	clpC	1995435..1998020 (-)	2586	WP_004086589.1	ATP-dependent chaperone ClpB	Regulator
R3J28_RS09295 (R3J28_09270)	-	1998525..1998755 (-)	231	WP_162852410.1	rubredoxin	-
R3J28_RS09300 (R3J28_09275)	thiE	1998790..1999404 (+)	615	WP_004086590.1	thiamine phosphate synthase	-
R3J28_RS09305 (R3J28_09280)	-	2000279..2001487 (+)	1209	WP_004086591.1	cytochrome P450	-

Sequence

Protein

• Length: 861 a.a.
• Molecular weight: 95602.24 Da
• Isoelectric Point: 5.3076

>NTDB_id=816896 R3J28_RS09290 WP_004086589.1 1995435..1998020(-) (clpC) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MRMDKLTSRFQNALADAQSLAVGRDHTIIEPVHVFSALLDQQGGSTRPLLVQAGVNVPLLRERLTEILEALPKVSGQTVN
VSPSNELSRLFHRTDKLAQQHGDQFMASEWFVLAVVDDSGGLGQALRAAGAEKKKIEAAIDKLRGGETVQTENAEEQRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLRSKRLLSL
DLGALIAGAKFRGEFEERLKGVLNDLAKNEGRVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNRYITDRQLPDKAIDLMDEAASR
IRMEIDSKPEELDRLERRLIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKESIE
QAKLDLEAAQRRQDYAKMSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEEIAEVVSRWTGIPVSKMLEGERDKLL
RMEADLGRRVVGQEEAIKVVSDAVRRSRTGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDAMVRIDMSEFMEK
HSVARLIGAPPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL
GSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD
RALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAGAFVSGDTVQVGVDGGKLVFAKV

Nucleotide

• Length: 2586 bp

>NTDB_id=816896 R3J28_RS09290 WP_004086589.1 1995435..1998020(-) (clpC) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGCGGATGGATAAGCTTACTTCCCGTTTCCAGAATGCGTTGGCTGATGCGCAATCGCTGGCCGTCGGTCGTGACCATAC
TATTATTGAGCCGGTGCATGTTTTTTCGGCATTGCTTGATCAGCAGGGGGGGAGTACACGTCCGTTGCTCGTGCAGGCCG
GTGTCAATGTGCCATTGCTGCGTGAGCGGTTGACCGAGATACTTGAGGCATTGCCGAAAGTGAGTGGTCAGACGGTTAAT
GTCTCACCCAGCAATGAATTGAGTCGTTTGTTTCATCGGACTGATAAGTTAGCGCAGCAGCATGGCGATCAGTTTATGGC
CAGTGAGTGGTTCGTGTTGGCTGTGGTCGATGATAGTGGGGGGCTGGGCCAGGCGTTGCGTGCTGCTGGTGCGGAAAAAA
AGAAGATTGAGGCTGCGATTGATAAATTGCGTGGCGGTGAAACTGTCCAGACTGAGAATGCTGAGGAGCAGCGTCAAGCG
TTGGAAAAGTACACGATTGATCTGACTGCCAGGGCTGAGAGTGGCAAGCTTGATCCGGTGATTGGTCGTGATGAGGAAAT
TCGCCGCACGATACAGGTATTGCAGCGGCGTACAAAAAATAATCCTGTGCTGATTGGTGAGCCGGGTGTGGGTAAAACTG
CCATTGTAGAAGGTCTGGCTCAGCGCATTGTCAATGGTGAGGTTCCGGAAGGGTTGCGCAGTAAGCGTCTGCTCTCGCTG
GATTTGGGGGCGTTGATTGCTGGGGCCAAGTTTCGTGGTGAGTTCGAGGAGCGCTTGAAGGGGGTGCTTAACGATCTCGC
TAAGAATGAGGGGCGGGTCATTTTGTTCATTGACGAGCTGCATACCATGGTTGGTGCCGGTAAAGCCGATGGTGCGATGG
ATGCTGGCAATATGCTCAAGCCGGCGTTAGCACGTGGTGAGTTGCATTGTATCGGTGCGACTACGTTGGATGAGTATCGC
AAGTACATTGAGAAGGATGCGGCGTTGGAACGCCGTTTCCAGAAGGTGTTTGTTGGGGAGCCGACGGTGGAGGATACCAT
CGCAATTCTTCGTGGACTTAAGGAAAAGTATGCGTTGCACCACGGTGTGGAAATCACTGATCCGGCTATTGTTGCTGCGG
CTACGTTGTCTAATCGCTACATCACTGATCGTCAGTTACCAGATAAAGCGATTGACTTGATGGATGAGGCTGCCAGTCGT
ATTCGTATGGAAATTGACTCCAAGCCGGAAGAGCTTGATCGTTTGGAGCGTCGGTTGATTCAGTTGAAAATTCAGCGTGA
GATGCTGAAGAAAGAAAAGGATGAGGCGAGCAAGCAGCGTTTAGCCGATCTTGAGCGTGATATTGAGGTTCTGGACCGTG
AATTTTCCGATCTGGAGGAGGTGTGGAGATCAGAAAAAGCCGCGCTACAGGGGGCGACTAAGATCAAGGAGTCGATCGAG
CAGGCCAAGCTTGATTTGGAAGCCGCGCAGCGCCGTCAGGACTACGCCAAGATGAGCGAGATTCAGTATGGTGTACTCCC
CGCGTTGGAGAAGCAGCTGGTGGCAGCAAGTCAGGCGGAACAGCACGATTTTACTTTGGTGCAGGAGAAAGTGACTGCTG
AGGAGATTGCCGAGGTAGTTAGTCGTTGGACTGGTATTCCAGTGAGCAAGATGCTTGAGGGCGAGCGCGATAAGTTGTTG
CGTATGGAAGCTGATCTAGGTCGACGTGTGGTTGGTCAAGAGGAGGCGATCAAGGTGGTATCGGATGCGGTGCGCCGTTC
GCGTACTGGTTTGTCTGATCCAAATCGACCGAGCGGCTCGTTCCTTTTTCTGGGTCCGACGGGTGTTGGTAAGACTGAGT
TATGTAAGGCGCTGGCTGAATTTTTGTTCGACAGTCAAGATGCAATGGTCCGCATTGATATGAGTGAGTTCATGGAAAAA
CATTCTGTGGCGCGCCTGATTGGTGCGCCTCCGGGCTATGTGGGTTATGAGGAAGGAGGTTATCTTACTGAATTGGTGCG
ACGTCGGCCTTACTCTCTGATTCTTTTGGATGAAGTGGAGAAGGCGCATAGTGATGTGTTCAATATTCTGCTGCAAGTAC
TTGATGATGGACGCTTGACTGATGGTCAGGGCCGTACTGTTGATTTTCGCAATACTGTTATTGTGATGACATCAAACTTA
GGTTCACATCAGATCCAAGAACTCAGTGGAGACGATTCTCCGGAGGTGTATACGCAAATGAAGGCGGCAGTGATGGGGGT
GGTGCAGGCGCATTTTCGCCCAGAGTTCATTAACAGGTTGGATGATATTGTTGTTTTCCACCCGTTGGACAAGGCGCAAA
TCAAGCAGATTGCGCGGATTCAACTGCGGGGGCTAGAGAAGCGTCTCGCTGAATCTGAGTTGAAACTAGATTTGGATGAT
CGTGCGCTGGAATTGCTTGGTAATGTCGGATTTGATCCCGTATATGGTGCCCGCCCGCTGAAGAGAGCAATCCAATCTCA
GCTGGAGAATCCCTTAGCGCAGCAGATCTTAGCTGGAGCGTTCGTCAGTGGAGATACTGTGCAGGTGGGTGTTGATGGAG
GGAAGCTTGTATTCGCTAAGGTGTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-763)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-145)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.444	100	0.458
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.034	100	0.432
clpE	Streptococcus mutans UA159	48.472	79.791	0.387
clpC	Lactococcus lactis subsp. cremoris KW2	47.763	80.488	0.384
clpE	Streptococcus pneumoniae D39	47.832	80.372	0.384
clpE	Streptococcus pneumoniae R6	47.832	80.372	0.384
clpE	Streptococcus pneumoniae TIGR4	47.832	80.372	0.384
clpE	Streptococcus pneumoniae Rx1	47.832	80.372	0.384