Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   R3J26_RS09960 Genome accession   NZ_CP136970
Coordinates   2111571..2113727 (-) Length   718 a.a.
NCBI ID   WP_004086607.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain XF3348     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106571..2118727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J26_RS09945 (R3J26_09920) - 2107933..2109201 (-) 1269 WP_004086604.1 lipase family protein -
  R3J26_RS09950 (R3J26_09925) - 2109784..2110986 (-) 1203 WP_004086605.1 cytochrome P450 -
  R3J26_RS09955 (R3J26_09930) - 2111350..2111496 (-) 147 WP_004086647.1 hypothetical protein -
  R3J26_RS09960 (R3J26_09935) recG 2111571..2113727 (-) 2157 WP_004086607.1 ATP-dependent DNA helicase RecG Machinery gene
  R3J26_RS09965 (R3J26_09940) - 2113736..2114119 (-) 384 WP_024749306.1 RidA family protein -
  R3J26_RS09970 (R3J26_09945) - 2114322..2116493 (-) 2172 WP_154128327.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 78554.23 Da        Isoelectric Point: 8.2928

>NTDB_id=816840 R3J26_RS09960 WP_004086607.1 2111571..2113727(-) (recG) [Xylella fastidiosa subsp. multiplex strain XF3348]
MPRARSHAIDLNVAGNAPLSVLPRVGPVLAGKCAARGIFTLQDLWLLLPLRYEDRTRLTPIAELQDGVAVQIEARVEAVE
RSFRYRPLLRVVLSDDAHHILTMRFFHFRAAQIARFTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEAVSLNDCLDPV
YPVIDGVGPAIVRQLIREALEHLPTDAVLELLPDVWLSDLGLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEEL
LAHQLSLRRQRIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVPMLRLVQGDVGSGKTVVAALA
ALLAVEQNKQVALAAPTALLAEQHLINLRDWLEPLGVRVHWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGAIAGIVPHQLVMTATPIPRTLAMAAYADLDVSVIDEMPPGRTPVQTNVLSAERRP
ELVERIRLACAQGRQVYWVCTLIDESQTEAEHAPHSSNDIGPRSEVQAAQATYEALSAQLPGVRVGLVHGRMKAAEKQRT
MRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGLAQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQ
TNDGFAIAEKDLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQLADQVIARWIGSAVRYASA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=816840 R3J26_RS09960 WP_004086607.1 2111571..2113727(-) (recG) [Xylella fastidiosa subsp. multiplex strain XF3348]
ATGCCGCGTGCACGTTCGCATGCCATCGACTTGAACGTAGCTGGCAATGCCCCATTGTCGGTGCTGCCGCGGGTTGGGCC
GGTATTAGCTGGAAAATGCGCTGCACGTGGCATCTTCACCTTGCAGGATTTGTGGCTACTGCTCCCATTACGTTATGAGG
ACCGTACCCGGCTAACCCCGATTGCCGAGCTTCAGGATGGGGTTGCGGTTCAGATCGAGGCCCGAGTGGAAGCGGTGGAG
CGTAGTTTCCGTTACCGGCCGCTATTACGTGTGGTGTTGTCCGACGACGCACATCACATACTGACGATGCGTTTTTTCCA
TTTTCGCGCCGCACAGATTGCACGGTTTACTGTCGGCACACGGGTGCGTGCGTATGGCGTACCCAAACTTGGCCAATATG
GTTGGGAGATTGTCCATCCCAGCTACCGCATTCTTGCCCCTGGTGAAGCTGTCAGCCTCAATGACTGCTTGGACCCGGTG
TATCCGGTGATTGATGGCGTGGGGCCTGCCATCGTGCGTCAGCTCATCCGCGAAGCGTTGGAACATTTACCTACGGATGC
AGTCTTAGAACTCTTGCCAGACGTTTGGTTGAGTGACCTTGGCCTGCCAACGCTGCGTACTGCCCTACTGATCATGCACC
GGCCCCCGCTGGATGCGGATATTGCCCGATTGATGGTGGGCACTCACCCCGCGCAGCAGCGCTTGTCGTTGGAAGAATTG
CTTGCCCACCAACTCAGCCTGCGTCGCCAGCGTATTGCATTGCAACGTCATTCCGCCCCCGCATTGCCTGATGGAGCGGC
TTTGGTGGCCTCTTTGTTGCATGCACTGCCGTTTCACCTCACTGCTGCGCAGCAACGGGTATTCGCCCAGATTGCTGCTG
ATGTGGCCAAGCCGGTCCCAATGCTGCGTCTTGTGCAGGGTGATGTTGGCAGCGGTAAGACCGTGGTTGCAGCATTGGCC
GCATTGCTTGCTGTTGAGCAAAACAAGCAGGTGGCTCTGGCGGCACCGACAGCGTTACTGGCCGAGCAACACCTTATCAA
CCTGCGTGACTGGCTGGAGCCATTGGGCGTGCGTGTGCATTGGTTGGCTGCCAAGGTGACCGGCAAGGCCCGTCTCCAAG
CGCTGAATGATGTGGCCTCTGGTGATGCGCAGGTGGTGGTCGGCACACATGCCCTGATGCAGGAGTCTGTGGTGTTTCAT
GACTTGGCACTGACCATTGTCGATGAACAGCACCGTTTTGGCGTCCATCAGCGTTTGTTGCTTCGTGACAAAGGGGCCAT
TGCTGGCATTGTGCCGCATCAGTTAGTGATGACCGCTACACCGATTCCACGCACCTTAGCGATGGCTGCGTATGCTGATT
TGGATGTTTCGGTGATTGACGAAATGCCGCCTGGCCGTACCCCTGTGCAAACGAATGTATTGAGTGCTGAGCGTCGCCCG
GAATTGGTGGAACGTATCCGTCTGGCTTGTGCTCAGGGGCGCCAGGTTTATTGGGTGTGTACGCTGATCGACGAAAGCCA
AACGGAAGCAGAACATGCACCCCACAGCAGTAACGATATTGGGCCTCGCAGCGAGGTACAGGCGGCACAGGCCACCTATG
AAGCACTGTCTGCACAATTGCCTGGTGTCCGTGTCGGACTCGTGCATGGGCGCATGAAAGCAGCGGAAAAACAGCGGACA
ATGCGTGCATTCAAATGCAACGAAATTGATGTCTTAGTTGCTACCACGGTGATTGAGGTGGGTGTCGATGTCCCCAATGC
GTCGCTCATGATTATCGAAAATGCTGAGCGTTTGGGTTTAGCGCAACTCCATCAGTTACGTGGTCGGGTCGGACGTGGTT
CTGTTGTGTCAAGTTGCGTTCTGTTGTATCAGCCCCCACTGTCGATGCTGGCGCGTCAGCGTCTGCAAATCATGCGCCAG
ACGAATGATGGTTTTGCGATTGCTGAAAAAGATCTGGAATTACGTGGTCCCGGCGAATTGTTGGGGACACGCCAAACAGG
TCTTGCAGCGTTTCGTGTTGCTGACCTTGCCCGCGATGCCCATCTGCTGCCCCGCGTGTATTCGTTGGCGAACATGTTGC
TTGACGAATCGCCACAGTTAGCTGATCAAGTGATTGCGCGCTGGATTGGTAGTGCGGTGCGTTATGCATCCGCCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(35-181)

Helicase conserved C-terminal domain (Helicase_C)

(535-613)

DEAD/DEAH box helicase (DEAD)

(283-442)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(641-701)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

47.832

96.379

0.461