Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R3J25_RS03705 Genome accession   NZ_CP136969
Coordinates   835572..836957 (-) Length   461 a.a.
NCBI ID   WP_031345738.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain XYL1752/17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 830572..841957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J25_RS03680 (R3J25_03670) - 832111..832380 (-) 270 WP_004083782.1 HPr family phosphocarrier protein -
  R3J25_RS03685 (R3J25_03675) - 832373..832765 (-) 393 WP_004083781.1 PTS sugar transporter subunit IIA -
  R3J25_RS03690 (R3J25_03680) rapZ 833136..834008 (-) 873 WP_004083780.1 RNase adapter RapZ -
  R3J25_RS03695 (R3J25_03685) hprK 834005..834955 (-) 951 WP_004083779.1 HPr(Ser) kinase/phosphatase -
  R3J25_RS03700 (R3J25_03690) hpf 835221..835538 (-) 318 WP_004083778.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R3J25_RS03705 (R3J25_03695) rpoN/rpoN1 835572..836957 (-) 1386 WP_031345738.1 RNA polymerase factor sigma-54 Machinery gene
  R3J25_RS03710 (R3J25_03700) lptB 837005..837727 (-) 723 WP_004083776.1 LPS export ABC transporter ATP-binding protein -
  R3J25_RS03715 (R3J25_03705) lptA 837727..838257 (-) 531 WP_154128510.1 lipopolysaccharide transport periplasmic protein LptA -
  R3J25_RS03720 (R3J25_03710) lptC 838235..838804 (-) 570 WP_004083774.1 LPS export ABC transporter periplasmic protein LptC -
  R3J25_RS03725 (R3J25_03715) - 838801..839349 (-) 549 WP_004083773.1 HAD family hydrolase -
  R3J25_RS03730 (R3J25_03720) - 839367..840368 (-) 1002 WP_027700003.1 KpsF/GutQ family sugar-phosphate isomerase -
  R3J25_RS03735 (R3J25_03725) - 840430..840657 (+) 228 WP_004083771.1 BolA family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51226.22 Da        Isoelectric Point: 6.3573

>NTDB_id=816757 R3J25_RS03705 WP_031345738.1 835572..836957(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. multiplex strain XYL1752/17]
MKARLRTSIGQQLVMTPQLHQSIRLLQMSNAELQLEITAAIESNPLLDWAENQSSETSEAAETEVETEDWQAKESAWDIN
GSKSNENDDNNPAERLTNENTLTDHLLWQLRLSPLSARDYQIGTVLIDAIEEDGYLREPLSTLTATITPLSVDESELLPV
LRHIQSFDPTGVAARSLAECLTLQLKSLREAIPGRTLALQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLD
PRPGKKIGDLEVGTYVIPDCVIWRQHGLWQATLLGHGFPQVVLHRGYEQLINRCNDANASYLRNQLQEARWLLKGLEARG
ETLLKVVNSLIRHQAGFLEFGQHALRPLTIRELATELALHESTVSRAIAGKYVRTPRGTLALRTFFASGISTDNGGETSS
SAIQAIIRRLIETENPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAMNISASHERVRVLG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=816757 R3J25_RS03705 WP_031345738.1 835572..836957(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. multiplex strain XYL1752/17]
TTGAAAGCAAGACTGCGAACATCCATCGGACAACAGCTGGTCATGACACCCCAGCTACACCAAAGCATCCGTCTGCTGCA
AATGTCCAACGCCGAATTGCAACTGGAAATCACCGCAGCGATAGAGAGCAATCCACTCTTGGACTGGGCCGAGAACCAAT
CATCGGAGACCAGCGAAGCTGCCGAAACGGAAGTAGAAACAGAAGATTGGCAGGCCAAGGAGTCGGCCTGGGATATCAAC
GGCAGTAAAAGCAACGAAAATGACGACAACAACCCTGCTGAACGTCTGACCAACGAAAACACTCTCACTGATCACTTGCT
GTGGCAACTGCGCCTCTCTCCACTGTCAGCACGTGATTACCAAATAGGCACCGTCTTGATTGATGCCATAGAAGAAGATG
GTTACCTGCGTGAACCTTTATCCACACTGACTGCAACCATAACCCCGTTATCTGTAGATGAAAGCGAACTGCTACCAGTA
TTACGACACATTCAATCTTTTGACCCGACCGGCGTAGCTGCACGCTCGCTGGCCGAGTGCTTGACGCTGCAACTGAAATC
ATTGAGAGAAGCGATACCCGGACGCACACTTGCACTGCAGATTGTCAACAGCCCACTGCTCGAACAATTGCCCCGCAGTG
GTGTCACCGGACTGGCGCGCGAACTGAAACGACCCTCCCAAGACGTCCAACAGGCAGTGGAATTGATCCGTGGACTGGAC
CCTCGCCCAGGTAAGAAAATTGGCGACTTAGAAGTTGGAACCTACGTTATACCGGACTGTGTGATCTGGCGCCAACATGG
GCTGTGGCAAGCTACGCTGTTGGGACATGGATTCCCACAAGTCGTCCTACACCGCGGCTACGAACAGCTCATCAACCGCT
GCAATGACGCCAATGCGAGCTACCTACGCAACCAACTCCAAGAAGCACGATGGCTGCTCAAGGGCCTGGAAGCACGCGGT
GAAACTTTGTTAAAGGTGGTAAACAGCCTCATACGTCACCAAGCGGGGTTCTTGGAATTCGGCCAGCACGCGTTACGTCC
ATTGACTATCCGCGAATTAGCAACGGAACTTGCCCTGCATGAATCCACCGTATCCCGTGCAATTGCTGGCAAGTATGTAC
GCACCCCACGTGGCACCTTAGCGCTACGCACCTTTTTCGCTTCAGGAATCAGCACCGACAACGGCGGAGAGACCTCCAGC
TCTGCCATTCAAGCAATCATCAGACGTCTCATAGAAACTGAAAACCCCCGCAAGCCACTCTCTGACGCCAAACTAGCTGA
ATTGCTGAAGACATCCGGTATTCCAGTAGCGCGACGCACCATAGCAAAGTATCGTGATGCTATGAACATCTCCGCATCCC
ACGAACGCGTCCGAGTCCTAGGATGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(300-458)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(94-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38.2

100

0.414