Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   R3J31_RS08140 Genome accession   NZ_CP136968
Coordinates   1756738..1759653 (+) Length   971 a.a.
NCBI ID   WP_004085953.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain XYL1966/18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751738..1764653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J31_RS08115 (R3J31_08105) murJ 1752455..1754065 (-) 1611 WP_154128371.1 murein biosynthesis integral membrane protein MurJ -
  R3J31_RS08120 (R3J31_08110) rpsT 1754165..1754434 (+) 270 WP_010894866.1 30S ribosomal protein S20 -
  R3J31_RS08125 (R3J31_08115) obgE 1754551..1755624 (-) 1074 WP_004085947.1 GTPase ObgE -
  R3J31_RS08130 (R3J31_08120) rpmA 1755799..1756056 (-) 258 WP_004085949.1 50S ribosomal protein L27 -
  R3J31_RS08135 (R3J31_08125) rplU 1756080..1756400 (-) 321 WP_031345770.1 50S ribosomal protein L21 -
  R3J31_RS08140 (R3J31_08130) uvrA 1756738..1759653 (+) 2916 WP_004085953.1 excinuclease ABC subunit UvrA Machinery gene
  R3J31_RS08145 (R3J31_08135) - 1759761..1760696 (-) 936 WP_004085954.1 hypothetical protein -
  R3J31_RS08150 (R3J31_08140) guaA 1760928..1762496 (-) 1569 WP_154128373.1 glutamine-hydrolyzing GMP synthase -
  R3J31_RS08155 (R3J31_08145) guaB 1762734..1764191 (-) 1458 WP_004085959.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 971 a.a.        Molecular weight: 107704.87 Da        Isoelectric Point: 6.9556

>NTDB_id=816715 R3J31_RS08140 WP_004085953.1 1756738..1759653(+) (uvrA) [Xylella fastidiosa subsp. multiplex strain XYL1966/18]
MTALIRIRGARTHNLKNLNLDLPRNTLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDLDQIEGL
SPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGQPRCPDHHYPLEAQTVSQMVDHVLTLDPEQRYMLLAPVVRERK
GEHTQVFEQLRAQGFVRVRVDGELYEIDAVPTLTLRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGNGMASVQTLDT
TTTTPHLFSSKYSCPVCDYSLPELEPRLFSFNAPMGACPACNGLGVTEFFDPAKVVIHPDLSLSAGAVRGWDRRNAYYFQ
LIASLAKHYTFDIDASWESLPEEIRHTILFGSGDEQINFTYLTEAGGRTKRKHRFEGIVPNLERRYRETESAAVREELAK
YVSTRTCPECGGTRLNRAARNVFVADRTLPELTVLPINDALEFFKTLRLPGWRGEIAIKIVKEIGERLGFLVDVGLDYLT
LERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRQADHILD
IGPGAGVHGGEICAQGSLEQIMAAPRSLTGQYLSGRRRIEIPKQRHPPNATKMLHLRGACGNNLKGVNLDIPEGLFTCIT
GVSGSGKSTLINDTLFTLAANEINGASHPIAPYASVDGLELFDKVVDIDQSPIGRTPRSNPATYTGMFTPLRELFAQVPE
ARARGYSPGRFSFNVRGGRCEACEGDGLIKVEMHFLPDVYVPCDVCQGKRYNRETLEIRYKGYNINDVLEMTVEDALKLF
EAVPAIARKLETLVDVGLSYLKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFYDIEALLAVLHKLRD
AGNTVIVIEHNLDVIKTADWVIDLGPEGGGRGGEILVAGTPEAVAAHPHSHTGHFLAKLLPPKDVSNCGLIGTLEKRLTL
HKRYTVREHPR

Nucleotide


Download         Length: 2916 bp        

>NTDB_id=816715 R3J31_RS08140 WP_004085953.1 1756738..1759653(+) (uvrA) [Xylella fastidiosa subsp. multiplex strain XYL1966/18]
GTGACGGCCCTCATCCGTATCCGCGGCGCGCGGACACACAACCTTAAGAATCTGAATCTTGACCTACCGCGTAACACACT
GATCGTCATTACCGGCCTCTCCGGCTCTGGCAAATCATCGTTGGCTTTTGACACGATCTACGCTGAAGGTCAGCGGCGCT
ATGTCGAATCACTATCGGCCTACGCGCGGCAGTTTTTAAGCGTGATGGAAAAGCCGGATCTGGACCAGATTGAAGGGCTG
TCTCCGGCTATTTCAATTGAACAAAAGTCAACCTCGCATAATCCCCGCTCCACCGTCGGTACGATCACCGAGATCTACGA
TTATTTGCGTCTGCTGTATGCACGTGTCGGACAACCGCGCTGCCCGGACCATCATTACCCGCTGGAAGCACAAACAGTGA
GCCAGATGGTGGATCACGTATTGACCTTGGATCCAGAGCAGCGCTACATGCTGTTGGCACCTGTGGTACGTGAGCGCAAG
GGTGAACATACCCAAGTGTTCGAACAACTGCGTGCACAAGGCTTTGTGCGCGTGCGCGTGGATGGCGAACTGTATGAGAT
CGACGCGGTGCCAACACTGACACTGCGTCAGAAGCATACGATTGAAGCGGTCATTGACCGTTTTCGCCCACGTGAAGACA
TCAAGCAACGTTTGGCGGAAAGCTTTGAAACTGCATTGAAGTTGGGCAACGGGATGGCTTCGGTCCAAACGCTGGACACA
ACAACAACCACACCACACCTGTTTTCCTCTAAGTACTCCTGTCCAGTATGCGATTATTCGCTACCGGAATTAGAGCCACG
GTTGTTCTCCTTCAACGCCCCGATGGGGGCGTGCCCCGCGTGCAACGGTCTGGGAGTCACCGAGTTTTTCGACCCGGCCA
AGGTCGTCATACATCCAGATCTTTCACTGTCAGCTGGTGCTGTGCGTGGTTGGGACCGCCGCAACGCTTACTATTTTCAA
TTGATCGCTTCGCTCGCCAAGCACTATACGTTCGACATTGACGCATCATGGGAATCGCTCCCTGAAGAAATCCGTCATAC
CATCCTGTTCGGCAGTGGCGATGAGCAGATCAACTTCACCTATTTGACGGAAGCTGGAGGGCGTACCAAGCGCAAGCATC
GCTTTGAAGGCATTGTGCCGAACCTAGAGCGCCGCTACCGTGAGACAGAATCCGCTGCCGTACGTGAGGAACTGGCCAAG
TACGTCAGTACGCGGACCTGCCCGGAGTGCGGCGGCACACGTCTGAACCGCGCCGCACGCAATGTATTTGTTGCCGATCG
GACGCTCCCTGAGCTGACAGTGCTGCCAATTAATGACGCATTGGAATTCTTCAAAACGCTACGCCTGCCAGGCTGGCGTG
GTGAGATCGCAATTAAAATTGTCAAAGAAATCGGGGAGCGTCTCGGCTTCCTGGTCGATGTTGGTCTGGACTACCTAACA
TTGGAGCGTAAGGCCGACACCCTCTCTGGTGGTGAAGCACAACGTATCCGCCTAGCGAGTCAGATCGGTGCTGGTCTAGT
GGGAGTGATGTATGTGCTGGACGAACCCTCCATCGGATTGCACCAGCGTGATAACGAACGCCTGCTCGGTACACTAACTC
GGTTGCGCGACCTTGGTAATACGGTGATTGTCGTTGAACACGACGAGGACGCCATCCGCCAAGCCGACCATATTCTCGAC
ATTGGTCCCGGTGCCGGTGTGCATGGTGGTGAGATCTGTGCTCAGGGGTCGTTGGAACAGATTATGGCCGCGCCGCGCTC
CTTGACTGGCCAATACTTATCCGGTCGACGCCGGATTGAAATCCCCAAACAGCGCCACCCCCCCAACGCCACGAAGATGC
TGCACCTACGCGGCGCCTGCGGTAATAACCTTAAAGGCGTTAATCTTGACATCCCTGAGGGTCTGTTTACTTGCATTACT
GGGGTGTCCGGCTCCGGTAAATCGACGCTCATCAACGACACGTTGTTTACGTTAGCCGCAAACGAGATCAATGGTGCTTC
TCATCCCATTGCGCCGTATGCGTCAGTCGATGGTCTAGAGCTGTTCGACAAAGTGGTAGACATTGATCAATCACCGATCG
GACGCACGCCACGCTCCAACCCAGCAACCTACACTGGCATGTTCACCCCGTTACGCGAGCTCTTTGCGCAGGTTCCGGAG
GCGCGCGCGCGCGGTTATTCTCCAGGACGTTTCAGCTTCAACGTGCGCGGTGGGCGCTGTGAAGCGTGTGAGGGCGACGG
GCTGATTAAGGTTGAAATGCACTTTTTACCCGACGTCTACGTGCCATGCGATGTATGTCAAGGCAAACGTTACAACCGTG
AGACGCTGGAAATACGATACAAGGGATATAACATCAACGACGTGCTGGAGATGACCGTTGAAGATGCCTTAAAACTGTTT
GAAGCAGTACCAGCAATTGCACGCAAGCTGGAAACTTTGGTAGATGTAGGCTTGAGCTACCTCAAACTCGGCCAGAGTGC
GACGACGCTATCAGGCGGTGAGGCGCAGCGTGTCAAATTGTCCAAAGAGCTGTCACGACGCGACACCGGACGCACGCTGT
ATATCCTTGACGAACCAACCACTGGGCTGCATTTTTACGACATTGAAGCGCTGCTGGCAGTACTGCACAAACTGCGCGAT
GCAGGGAATACGGTCATCGTGATTGAGCATAATTTAGATGTGATCAAAACGGCGGATTGGGTCATTGATCTCGGCCCGGA
GGGAGGCGGACGCGGTGGTGAAATCCTGGTGGCCGGCACTCCTGAAGCGGTGGCTGCGCATCCTCACTCGCATACTGGCC
ACTTCTTAGCCAAGCTGTTACCTCCTAAGGATGTATCCAACTGCGGTCTCATCGGAACCCTAGAGAAGAGGTTGACATTG
CACAAACGGTACACCGTTAGAGAACATCCACGATGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-400)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

55.851

96.807

0.541
  uvrA Streptococcus pneumoniae TIGR4

55.851

96.807

0.541
  uvrA Streptococcus pneumoniae D39

55.851

96.807

0.541