Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R3H61_RS07900 Genome accession   NZ_CP136951
Coordinates   1589412..1589891 (-) Length   159 a.a.
NCBI ID   WP_229293986.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo09     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1584412..1594891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H61_RS07880 (R3H61_07885) - 1584581..1585186 (-) 606 WP_002982799.1 response regulator -
  R3H61_RS07885 (R3H61_07890) - 1585167..1586729 (-) 1563 WP_030126269.1 ATP-binding protein -
  R3H61_RS07890 (R3H61_07895) - 1586769..1588676 (-) 1908 WP_330554632.1 FtsX-like permease family protein -
  R3H61_RS07895 (R3H61_07900) - 1588678..1589415 (-) 738 WP_129284165.1 ABC transporter ATP-binding protein -
  R3H61_RS07900 (R3H61_07905) comA/nlmT 1589412..1589891 (-) 480 WP_229293986.1 ATP-binding cassette domain-containing protein Regulator
  R3H61_RS07905 (R3H61_07910) - 1589947..1591572 (-) 1626 WP_136285326.1 DUF4135 domain-containing protein -
  R3H61_RS07910 (R3H61_07915) - 1591656..1591811 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  R3H61_RS07915 (R3H61_07920) lacG 1592314..1593720 (-) 1407 WP_129284167.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18466.08 Da        Isoelectric Point: 6.0020

>NTDB_id=816668 R3H61_RS07900 WP_229293986.1 1589412..1589891(-) (comA/nlmT) [Streptococcus pyogenes strain Spyo09]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIMSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=816668 R3H61_RS07900 WP_229293986.1 1589412..1589891(-) (comA/nlmT) [Streptococcus pyogenes strain Spyo09]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCATGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.268

93.711

0.377
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371