Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R3H61_RS04620 Genome accession   NZ_CP136951
Coordinates   918462..919532 (+) Length   356 a.a.
NCBI ID   WP_032464390.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 913462..924532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H61_RS04600 (R3H61_04600) - 914468..915166 (+) 699 WP_161761999.1 GntR family transcriptional regulator -
  R3H61_RS04605 (R3H61_04605) - 915264..915596 (+) 333 WP_227874766.1 putative DNA-binding protein -
  R3H61_RS04610 (R3H61_04610) ffh 915611..917173 (+) 1563 WP_136116720.1 signal recognition particle protein -
  R3H61_RS04615 (R3H61_04615) - 917290..917988 (-) 699 WP_011528664.1 XRE family transcriptional regulator -
  R3H61_RS04620 (R3H61_04620) xerS 918462..919532 (+) 1071 WP_032464390.1 tyrosine recombinase XerS Machinery gene
  R3H61_RS04625 (R3H61_04625) - 920233..920715 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  R3H61_RS04630 (R3H61_04630) citC 920804..921856 (+) 1053 WP_115225030.1 [citrate (pro-3S)-lyase] ligase -
  R3H61_RS04635 (R3H61_04635) - 921967..923361 (-) 1395 WP_161761991.1 oxaloacetate decarboxylase subunit alpha -
  R3H61_RS04640 (R3H61_04640) citX 923376..923954 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.5552

>NTDB_id=816643 R3H61_RS04620 WP_032464390.1 918462..919532(+) (xerS) [Streptococcus pyogenes strain Spyo09]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=816643 R3H61_RS04620 WP_032464390.1 918462..919532(+) (xerS) [Streptococcus pyogenes strain Spyo09]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803