Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   JMG82_RS03535 Genome accession   NZ_AP023212
Coordinates   718687..719088 (-) Length   133 a.a.
NCBI ID   WP_201353558.1    Uniprot ID   -
Organism   Hydrogenimonas urashimensis strain SSM-sur55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 713687..724088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMG82_RS03510 tatC 713994..714740 (+) 747 WP_201353553.1 twin-arginine translocase subunit TatC -
  JMG82_RS03515 queA 714733..715782 (+) 1050 WP_201353554.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  JMG82_RS03520 - 715802..715951 (+) 150 WP_201353555.1 hypothetical protein -
  JMG82_RS03525 - 715953..716741 (+) 789 WP_201353556.1 exodeoxyribonuclease III -
  JMG82_RS03530 - 716751..718613 (+) 1863 WP_201353557.1 GGDEF domain-containing protein -
  JMG82_RS03535 dprB 718687..719088 (-) 402 WP_201353558.1 Holliday junction resolvase RuvX Machinery gene
  JMG82_RS03540 - 719090..719407 (-) 318 WP_201353559.1 hypothetical protein -
  JMG82_RS03545 - 719411..719956 (-) 546 WP_236579180.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  JMG82_RS03550 - 720008..720400 (+) 393 WP_201353560.1 hypothetical protein -
  JMG82_RS03555 - 720387..721160 (-) 774 WP_201353561.1 DNA-processing protein DprA -
  JMG82_RS03560 - 721162..722496 (-) 1335 WP_201353562.1 SLC13 family permease -
  JMG82_RS03565 - 722586..723650 (-) 1065 WP_201353563.1 divergent polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14804.99 Da        Isoelectric Point: 7.2068

>NTDB_id=81664 JMG82_RS03535 WP_201353558.1 718687..719088(-) (dprB) [Hydrogenimonas urashimensis strain SSM-sur55]
MGTDAKTAAIDVGLKRIGTAITLDGKVAIPQNPILRKNREQAARDLDAFLKEWGIERLVVGIPKGGSSSEEMERRIRHFV
KLLDFDGEIVYVDESGSSVEAAEMMKGITRQRRDGRLDSVAAQLILERYLLNH

Nucleotide


Download         Length: 402 bp        

>NTDB_id=81664 JMG82_RS03535 WP_201353558.1 718687..719088(-) (dprB) [Hydrogenimonas urashimensis strain SSM-sur55]
GTGGGCACCGATGCGAAAACCGCCGCCATCGATGTAGGACTCAAGCGCATAGGTACGGCGATTACGCTGGACGGGAAGGT
GGCGATACCCCAGAATCCGATATTGCGGAAAAACAGGGAACAGGCCGCGCGCGACCTGGACGCCTTCTTGAAAGAGTGGG
GCATCGAAAGGCTGGTCGTGGGGATTCCCAAAGGCGGTAGCAGTTCGGAAGAGATGGAACGCAGGATCCGCCACTTCGTC
AAGCTCCTCGATTTCGACGGAGAGATCGTCTATGTCGACGAATCCGGAAGCAGTGTGGAAGCCGCGGAAATGATGAAGGG
TATCACGCGCCAGCGCAGAGACGGCAGGCTCGATTCCGTCGCTGCGCAACTCATACTCGAGCGATACCTTCTGAATCACT
GA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(7-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.254

100

0.496

Multiple sequence alignment