Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   R3H37_RS00340 Genome accession   NZ_CP136948
Coordinates   55342..55440 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo01     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 50342..60440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H37_RS00325 (R3H37_00325) purB 51573..52865 (+) 1293 WP_129284462.1 adenylosuccinate lyase -
  R3H37_RS00330 (R3H37_00330) comR 52996..53907 (+) 912 WP_014635220.1 helix-turn-helix domain-containing protein Regulator
  R3H37_RS00335 (R3H37_00335) - 53962..55152 (-) 1191 WP_002299749.1 IS256-like element ISLgar5 family transposase -
  R3H37_RS00340 (R3H37_00340) comS 55342..55440 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  R3H37_RS00345 (R3H37_00345) ruvB 55471..56469 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  R3H37_RS00350 (R3H37_00350) - 56607..57044 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  R3H37_RS00355 (R3H37_00355) - 57067..57468 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  R3H37_RS00360 (R3H37_00360) - 57465..59240 (+) 1776 WP_014407199.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=816397 R3H37_RS00340 WP_020833188.1 55342..55440(+) (comS) [Streptococcus pyogenes strain Spyo01]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=816397 R3H37_RS00340 WP_020833188.1 55342..55440(+) (comS) [Streptococcus pyogenes strain Spyo01]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437