Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RJD36_RS10610 Genome accession   NZ_CP136943
Coordinates   2096145..2098970 (-) Length   941 a.a.
NCBI ID   WP_003066345.1    Uniprot ID   E0PFT7
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2091145..2103970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS10570 (RJD36_10570) nusB 2091487..2091915 (-) 429 WP_003066329.1 transcription antitermination factor NusB -
  RJD36_RS10575 (RJD36_10575) - 2091908..2092297 (-) 390 WP_012962452.1 Asp23/Gls24 family envelope stress response protein -
  RJD36_RS10580 (RJD36_10580) efp 2092367..2092927 (-) 561 WP_003066333.1 elongation factor P -
  RJD36_RS10585 (RJD36_10585) - 2093096..2093251 (+) 156 WP_003066335.1 hypothetical protein -
  RJD36_RS10590 (RJD36_10590) - 2093704..2094030 (-) 327 WP_003066337.1 hypothetical protein -
  RJD36_RS10595 (RJD36_10595) - 2094031..2094345 (-) 315 WP_231729891.1 hypothetical protein -
  RJD36_RS10600 (RJD36_10600) - 2094450..2094914 (-) 465 WP_009854890.1 deaminase -
  RJD36_RS10605 (RJD36_10605) - 2094936..2095997 (-) 1062 WP_003066343.1 Xaa-Pro peptidase family protein -
  RJD36_RS10610 (RJD36_10610) uvrA 2096145..2098970 (-) 2826 WP_003066345.1 excinuclease ABC subunit UvrA Machinery gene
  RJD36_RS10615 (RJD36_10615) - 2099286..2100230 (+) 945 WP_003066347.1 magnesium transporter CorA family protein -
  RJD36_RS10620 (RJD36_10620) - 2100533..2101189 (+) 657 WP_013852223.1 DUF1129 domain-containing protein -
  RJD36_RS10625 (RJD36_10625) - 2101234..2101683 (-) 450 WP_003066351.1 hypothetical protein -
  RJD36_RS10630 (RJD36_10630) - 2101685..2101894 (-) 210 WP_003066353.1 helix-turn-helix transcriptional regulator -
  RJD36_RS10635 (RJD36_10635) - 2101897..2102421 (-) 525 WP_003066354.1 DUF2975 domain-containing protein -
  RJD36_RS10640 (RJD36_10640) rpsR 2102556..2102795 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  RJD36_RS10645 (RJD36_10645) ssbA 2102856..2103371 (-) 516 WP_003066357.1 single-stranded DNA-binding protein Machinery gene
  RJD36_RS10650 (RJD36_10650) rpsF 2103383..2103673 (-) 291 WP_003066359.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103941.23 Da        Isoelectric Point: 6.3287

>NTDB_id=816372 RJD36_RS10610 WP_003066345.1 2096145..2098970(-) (uvrA) [Streptococcus pasteurianus strain WUSP082]
MQDKLIIRGARAHNLKNINVDIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARMFLGNMEKPDVDSIEGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVDQVLELPERTRMQILAPVVRRKK
GQHKTIFDRIQKDGYVRVRVDGEIFDISEVPELSKSKMHNIEIVVDRLINKDGIRSRLFDSVEAALRLADGYVIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGSKLEVDLDLVIPDRSKTLREGALAPWNPISSNYYPAML
EQAMTSFGIDMDTPFENLTEEEQNLVLYGSGEREFHFHYINDFGGERNIDLPFEGVVNNIDRRYHETNSDFTRNVMRGYM
NELPCATCHGYRLNNQALCVRVGGENGLNIGQVSDLSVADHLELLTHLELSENEKTIAMPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMRQADWLI
DVGPGAGDFGGQIVASGTPEDVAKNKKSITGQYLSGAKEIPVPLERRKGNGRVLRVKGASENNLQNIDVTFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLNRNSAKPGKHKALEGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILDMTVNDAVEFF
APIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGQIVATGTPEEVVKVKESFTGQYLKDKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=816372 RJD36_RS10610 WP_003066345.1 2096145..2098970(-) (uvrA) [Streptococcus pasteurianus strain WUSP082]
ATGCAAGATAAATTAATTATTCGTGGGGCACGTGCCCACAATTTAAAAAATATCAATGTTGACATTCCGCGGGATAAGTT
GGTTGTTGTGACTGGTTTGTCTGGTTCGGGAAAGTCAAGTTTGGCATTTGATACGATTTACGCAGAAGGGCAACGTCGTT
ATGTAGAAAGTTTGTCAGCTTATGCGCGTATGTTTCTTGGTAATATGGAAAAACCAGATGTTGATTCGATTGAAGGTCTC
AGCCCTGCTATTTCCATTGACCAAAAAACAACTAGTAAAAATCCTCGCTCTACGGTAGGGACAACGACAGAAATTAACGA
TTATCTGCGTCTTTTATATGCTCGCGTGGGGACGCCGTATTGTATCAATGGGCATGGTGCCATTACGGCATCATCTGTTG
AGCAAATTGTTGACCAAGTTTTGGAATTGCCAGAACGGACGCGAATGCAGATTTTAGCGCCAGTTGTGCGTCGTAAAAAA
GGACAACACAAGACGATTTTTGACCGTATTCAAAAAGATGGTTATGTGCGTGTGCGCGTGGATGGCGAGATTTTCGATAT
TTCAGAAGTTCCTGAGTTATCTAAGAGCAAAATGCACAATATCGAAATCGTTGTTGACCGTTTGATTAATAAAGACGGTA
TCCGTTCGCGCTTGTTTGATTCGGTGGAAGCTGCGCTTCGATTGGCTGATGGTTATGTGATTATTGATACTATGGATGGT
AATGAATTGCTCTTTTCAGAGCATTATTCATGTCCTGTTTGTGGTTTTACCGTTCCAGAATTGGAACCACGTCTTTTTTC
ATTTAACGCACCGTTTGGTTCATGCCCAACCTGTGATGGCTTGGGAAGCAAATTGGAAGTCGATTTGGATTTGGTGATTC
CTGACCGTAGTAAAACGCTTCGTGAAGGGGCTTTAGCACCGTGGAATCCAATCTCATCTAACTATTACCCAGCCATGCTA
GAACAAGCCATGACTTCTTTTGGTATTGATATGGATACACCATTTGAAAATTTGACAGAAGAAGAACAAAACTTGGTCTT
GTATGGCTCAGGCGAGCGTGAATTCCATTTCCACTATATCAATGACTTTGGTGGTGAACGTAATATCGACCTTCCGTTTG
AGGGAGTCGTCAATAATATTGACCGCCGTTATCATGAAACAAATAGTGACTTTACACGTAATGTTATGCGTGGTTACATG
AATGAATTGCCATGTGCAACTTGTCATGGTTATCGTTTAAATAATCAAGCACTTTGTGTTCGTGTTGGTGGCGAAAATGG
CTTAAATATTGGGCAAGTGTCTGATTTGTCAGTTGCTGACCACTTGGAACTTTTAACTCACCTAGAACTCTCTGAAAATG
AAAAGACGATTGCAATGCCGATTGTTAAGGAAATCAAAGACCGTCTGACCTTCTTAAATAATGTTGGCTTGAATTATTTG
ACCTTGTCGCGTTCTGCGGGGACTTTATCTGGTGGTGAAAGTCAGCGTATTCGCTTGGCAACGCAAATTGGTTCAAACCT
ATCAGGTGTCCTTTATATTTTGGATGAACCTTCGATTGGGCTTCATCAACGTGACAATGACCGTTTGATTTCAAGCTTGA
AAAAAATGCGTGATTTGGGCAATACCTTGATTGTCGTTGAACACGATGAAGATACCATGCGCCAAGCTGATTGGCTCATT
GATGTCGGACCAGGTGCAGGTGATTTTGGTGGGCAAATTGTTGCCTCTGGAACGCCAGAAGATGTTGCCAAAAATAAAAA
ATCAATTACAGGGCAATATTTGTCTGGAGCAAAAGAAATTCCTGTGCCACTAGAACGTCGTAAAGGAAATGGGCGCGTGC
TTCGTGTCAAAGGTGCTTCTGAAAATAACCTGCAAAATATTGATGTGACTTTCCCACTTGGTAAATTCATTGCGGTGACA
GGTGTTTCGGGTTCTGGAAAATCAACCTTGGTTAACAGTATTTTGAAAAAAGCTGTTGCTCAAAAATTAAATCGCAATTC
TGCCAAACCTGGTAAACACAAGGCACTTGAAGGTATTGAGAACATTGAACGCTTGATTGACATTGACCAAAGCCCAATCG
GCCGTACTCCGCGTTCAAATCCTGCAACTTACACAGGTGTTTTTGATGATATTCGTGACCTTTTTGCTAAGACCAATGAA
GCTAAGATTCGTGGTTACAAAAAAGGACGTTTCTCATTTAACGTCAAAGGTGGACGTTGCGAGGCTTGCTCTGGTGACGG
AATTATCAAGATTGAAATGCACTTCTTGCCAGATGTTTACGTACCTTGCGAGGTTTGTCATGGCACACGTTATAATAGTG
AAACGCTTGAAGTTCATTACAAAGACAAAAATATCGCTGAAATTCTTGATATGACAGTCAATGATGCGGTTGAATTCTTT
GCACCAATCCCTAAAATCGCACGCAAATTGCAAACTATCAAAGACGTTGGACTTGGTTATGTTACTCTCGGACAACCAGC
CACAACGCTGTCTGGTGGTGAAGCACAGCGTATGAAATTGGCGAGTGAACTTCACAAACGCTCAACTGGTAAGAGCCTTT
ATATCCTTGATGAACCAACGACAGGACTTCACACAGATGACATTGCTCGTCTGCTTAAAGTCCTTCAACGCTTCGTGGAT
GATGGAAATACCGTGCTTGTCATTGAACACAATCTTGATGTGATTAAGACAGCTGACCACATTATCGACCTTGGACCAGA
AGGCGGTGTCGGTGGTGGACAAATCGTTGCCACAGGCACACCAGAAGAGGTCGTCAAAGTCAAAGAATCCTTCACAGGAC
AATATTTAAAAGACAAATTGAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PFT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.362

99.894

0.843
  uvrA Streptococcus pneumoniae TIGR4

84.362

99.894

0.843
  uvrA Streptococcus pneumoniae D39

84.362

99.894

0.843