Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   RJD36_RS07785 Genome accession   NZ_CP136943
Coordinates   1527308..1530550 (-) Length   1080 a.a.
NCBI ID   WP_117479279.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522308..1535550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS07775 (RJD36_07775) - 1522436..1523581 (+) 1146 WP_013851664.1 cobalamin-independent methionine synthase II family protein -
  RJD36_RS07780 (RJD36_07780) rexA 1523686..1527318 (-) 3633 WP_061100317.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RJD36_RS07785 (RJD36_07785) rexB 1527308..1530550 (-) 3243 WP_117479279.1 ATP-dependent nuclease subunit B Machinery gene
  RJD36_RS07790 (RJD36_07790) pheT 1530700..1533105 (-) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -
  RJD36_RS07795 (RJD36_07795) - 1533176..1533668 (-) 493 Protein_1476 GNAT family N-acetyltransferase -
  RJD36_RS07800 (RJD36_07800) pheS 1533704..1534747 (-) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124053.49 Da        Isoelectric Point: 5.0942

>NTDB_id=816353 RJD36_RS07785 WP_117479279.1 1527308..1530550(-) (rexB) [Streptococcus pasteurianus strain WUSP082]
MKLLYTDIQYDMTEILVGEAVAQADAGKRVFYIAPNSLSFEKERAVLELLRDEASFAITVTRFAQMARYFVLNEAQVKES
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLNLTELHSAEKQEDLVKIFLAVNDILLA
NQYDNQSKIAYFAKQVEAGHLDATLENVSLVIDGFTRFSAEEEYLVSLLEEKCAQVIIGTYSSQKAYRAAFSTGNIYQAS
LDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDVTLTADDKKHYAIWDVINQKEEVEHVAKAIRHKLY
QGYRYKDILVLLGDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGNFKQ
EDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPLLALFKAQKQRGSSLLEKLMTFLHAIHLPDNL
EGMVATFSENEQEKHEQVWRTFTGILTQFQTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNK
FVFALGMTQAHFPKIAQNSSLISDEERAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSATEELVLSLPQIANEAEDT
ESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSCVIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIEL
PLIKDNMQTKTVSADVIEARFPSDEPILLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDD
SNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESHYSLTVLEDIARSTATILRDDAQIQVESEEETFELMIANSVRIRGIID
RVDRLSDGSLGIVDYKSSRNTFDIQKFYNGLSPQLVTYVQALRDKKGLSESEHIFGAMYLHMQEPKVDLSSVATTEKILE
NLAKELTYRGLFLEDEKAYLANGRYHLNDSLYSQEELEILLAYNQNLYLKAAEQIKKGHFLINPYSEDGKSVQGDQLKAI
TRFEADRHMPYARKWYKLPRKDRRQGFLSLMQEEEETDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=816353 RJD36_RS07785 WP_117479279.1 1527308..1530550(-) (rexB) [Streptococcus pasteurianus strain WUSP082]
ATGAAATTACTATACACAGATATTCAGTATGATATGACTGAAATTTTAGTTGGAGAGGCAGTAGCTCAGGCAGATGCTGG
TAAGCGTGTTTTTTACATTGCTCCCAACTCTTTATCTTTTGAAAAAGAAAGAGCAGTTTTGGAGTTGTTACGAGACGAAG
CTTCTTTTGCGATTACGGTAACACGTTTTGCTCAAATGGCTCGTTATTTTGTGTTAAATGAAGCGCAGGTCAAGGAAAGC
ATTGATGACAATGGCTTGGCTATGATTTTTTATCGTGCTTTGTCACATTTTTCAGATACAGATTTGAAAGTTTTTGGGCG
TTTGAAGCAGGATACGAATTTTATCAAGCAGTTGGTTGATTTGTACAAAGAATTAAAAACGGCTAACATGACTGTGCTTA
ATTTGACAGAATTGCATTCAGCGGAGAAGCAGGAAGATTTGGTGAAAATCTTTTTAGCGGTTAATGATATTTTGCTTGCC
AATCAGTATGATAATCAGAGCAAGATTGCTTATTTTGCAAAGCAGGTTGAGGCAGGACATTTGGATGCCACGCTTGAAAA
TGTGAGCCTTGTCATTGACGGTTTTACACGCTTTTCAGCAGAAGAAGAGTATCTAGTAAGCTTGCTTGAAGAAAAATGTG
CGCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCGTATAGAGCGGCATTTTCGACGGGAAATATTTACCAAGCGAGT
TTAGATTTCTTGCGTGGTTTAGCGGCTAAATTCCATGCGCAACCGCAGTATGTTGAAAGTTCTCAGAAATCTCACGAGGC
TTTTTCAAAATTATCAAAATTATTCGAAGCAAAGCACGACTTTACGAGTTCAGATGTGACGCTGACGGCTGATGATAAAA
AACATTACGCTATTTGGGATGTCATTAATCAGAAAGAAGAGGTCGAGCATGTGGCAAAAGCTATTCGTCATAAGCTTTAT
CAAGGGTATCGTTACAAGGATATTTTAGTGCTCTTAGGTGATGTGGACAGCTATCGTTTGCAAATTGGCAAGATTTTTGA
CAAATATGACATTCCTTATTATTTCGGAAAAGCGGAGTCAATGAGTGACCACCCTTTGGTGCATTTTATTGATTCGTTGG
AGCGTGTGAAGCGTTATCGTTTTCGTACCGAAGATGTTGTTAATCTGTTAAAAACAGGGCTTTATGGAAATTTCAAGCAA
GAAGATTTAGACCTTTTTGAGCAATATTTGATTTATGCTGATATTAAGGGACAAAGCAAATTTGCCAAGGAGTTCACGAT
TGTTTATAAAGGAAAAAAACATTTAGCCTTTGTTAATCGCATGCGCGAGCAAATCATGACGCCTTTACTTGCTTTATTTA
AGGCGCAAAAGCAACGTGGCTCTAGTTTGCTTGAGAAATTAATGACATTTTTACACGCCATTCATTTGCCTGATAATCTA
GAAGGCATGGTAGCGACTTTTTCAGAAAATGAACAAGAAAAGCATGAGCAAGTTTGGCGGACATTTACAGGTATTTTAAC
GCAATTTCAAACGATTTTTGGGCAAGAAAAGTTATCGCTGGACGACTGTTTGTCCTTGATTCGTAGCGGAATGTTAGCTG
CGCAGTACCGTGTAGTGCCTGCAACGGTTGATGTTGTTTCGGTCAAATCTTATGATTTGGTGGAACCGCACACCAATAAA
TTTGTCTTTGCTTTGGGCATGACGCAGGCACATTTTCCAAAAATTGCGCAAAATAGTAGTCTGATTTCAGATGAAGAACG
TGCCCAAATCAACGAATCAACTGATGATAATCAACGTTTTGATATTGTTAGTCGCGAAAATATCAAGAAAAATCATTTTG
CTGCCCTATCGTTATTTAACTCGGCGACAGAAGAATTGGTGCTTAGTCTGCCACAAATTGCCAACGAAGCCGAAGATACG
GAATCTTCTTACTTAACCGAATTAGCTAGCTTTGGTGTGCCAGTTCTTGCTAAAGGTCGTAATCGTTTGTCAACGGATGC
TGAGGACATTGGTAATTATAAGGCCTTATTGTCTTGTGTGATTGAAGTCAATCGTTTGGCGATTGAAGAAGAGCGTGAAC
TTAGCAAGGAAGAGCAAACTTTCTGGTCAGTTGCTGTTCGTTATCTTCGAAAAAAATTGGCAGCAGAAGGCATTGAATTG
CCGCTGATTAAGGATAATATGCAAACTAAGACGGTCTCTGCCGACGTGATTGAGGCACGTTTTCCAAGTGATGAGCCGAT
TTTGTTATCATCATCTGCAGTCACTACCTTCTACAATAATCAGTATAAATATTTCTTGCAATATGTTCTTGGCTTGCAAG
AGGTTGAGACGATTCACCCAGATGCCAGAAATCATGGTACCTACCTGCATCGTGTTTTTGAATTGGTCATGAAAGATGAT
TCAAACCATTCTTTTGATAGCAAACTTGATAAAGCTATTCAGACAACGAATTTGGAAGACGATTTCAAATTTGTTTACGA
AGAAGATGAAGAAAGTCATTATTCTTTGACTGTCTTGGAAGATATTGCTAGAAGTACAGCAACGATTTTACGTGATGATG
CTCAGATTCAAGTTGAAAGTGAAGAAGAAACGTTTGAATTAATGATTGCAAATAGTGTTCGTATCAGAGGAATTATTGAC
CGTGTTGACCGCTTATCAGACGGCAGTCTTGGCATTGTGGATTACAAATCAAGTCGCAATACTTTTGATATTCAGAAATT
CTACAATGGTTTAAGTCCGCAATTGGTGACTTATGTGCAAGCTTTGCGTGATAAAAAAGGCTTGAGCGAGTCGGAGCATA
TTTTTGGTGCTATGTATTTGCATATGCAAGAGCCAAAAGTTGATTTGTCATCGGTGGCTACAACAGAGAAAATTTTAGAA
AATTTGGCTAAAGAGTTGACTTATCGTGGTCTATTCTTGGAAGATGAAAAAGCGTATTTAGCCAATGGTCGCTATCATCT
GAATGATTCGCTTTACAGTCAAGAAGAACTTGAGATTTTGCTAGCTTATAATCAAAACTTATATCTGAAAGCAGCAGAGC
AGATTAAGAAAGGGCATTTCTTGATTAATCCTTATAGTGAGGACGGTAAGTCAGTTCAAGGAGACCAATTGAAGGCAATC
ACACGATTTGAGGCTGACCGCCATATGCCTTATGCTCGCAAATGGTATAAATTACCAAGAAAAGATAGACGTCAAGGCTT
TTTGAGCCTAATGCAAGAAGAGGAGGAAACAGATGATCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.074

100

0.441