Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RJD36_RS06020 Genome accession   NZ_CP136943
Coordinates   1157561..1158076 (+) Length   171 a.a.
NCBI ID   WP_317751515.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152561..1163076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS12550 - 1153914..1154146 (+) 233 Protein_1118 hypothetical protein -
  RJD36_RS06000 (RJD36_06000) - 1154373..1154546 (+) 174 WP_155589451.1 DUF6442 family protein -
  RJD36_RS06005 (RJD36_06005) - 1154619..1155389 (+) 771 WP_013851827.1 ABC transporter ATP-binding protein -
  RJD36_RS06010 (RJD36_06010) - 1155379..1157358 (+) 1980 WP_117508694.1 FtsX-like permease family protein -
  RJD36_RS06015 (RJD36_06015) - 1157417..1157542 (+) 126 WP_317751513.1 hypothetical protein -
  RJD36_RS06020 (RJD36_06020) braR 1157561..1158076 (+) 516 WP_317751515.1 response regulator transcription factor Regulator
  RJD36_RS06025 (RJD36_06025) - 1158073..1159074 (+) 1002 WP_117508724.1 sensor histidine kinase -
  RJD36_RS06030 (RJD36_06030) - 1159123..1159416 (+) 294 WP_240207979.1 GntR family transcriptional regulator -
  RJD36_RS06035 (RJD36_06035) - 1159805..1159900 (+) 96 Protein_1126 sigma-70 family RNA polymerase sigma factor -
  RJD36_RS06040 (RJD36_06040) - 1160643..1160816 (+) 174 WP_117508695.1 hypothetical protein -
  RJD36_RS06045 (RJD36_06045) - 1160813..1161631 (+) 819 WP_117508696.1 replication initiator protein A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 20328.92 Da        Isoelectric Point: 8.8578

>NTDB_id=816342 RJD36_RS06020 WP_317751515.1 1157561..1158076(+) (braR) [Streptococcus pasteurianus strain WUSP082]
MLDINLPYENGYEVCRKIKQVMPVPIIFVTSRDTNADELKSIQVGGIDFITKPYDTLILLEKIKRALQLSNPNNFRELVK
KDCTLDLHLSILKYQEKSIELTRNEFRILYYFFMNEDKVISKEELLEKLWNDKYYLDENVLLVNMTRLKKKMKEIGIVHL
LENIRGKGWKL

Nucleotide


Download         Length: 516 bp        

>NTDB_id=816342 RJD36_RS06020 WP_317751515.1 1157561..1158076(+) (braR) [Streptococcus pasteurianus strain WUSP082]
TTGCTTGATATTAACCTCCCGTATGAAAATGGCTATGAGGTATGCAGGAAAATCAAACAAGTTATGCCAGTACCTATTAT
CTTTGTAACAAGCAGAGATACAAATGCTGACGAATTGAAAAGTATTCAAGTGGGCGGAATTGACTTCATCACAAAGCCGT
ATGACACGCTTATTCTTCTTGAGAAGATAAAGCGTGCATTGCAGTTATCAAACCCGAATAATTTCCGTGAGCTTGTTAAA
AAAGATTGTACCCTTGATTTACATTTATCTATTTTGAAGTATCAAGAGAAAAGCATTGAACTGACAAGAAATGAATTTCG
TATTTTATACTACTTCTTTATGAACGAAGATAAAGTTATTAGCAAAGAAGAACTATTGGAAAAGCTGTGGAACGACAAAT
ATTATTTAGACGAGAATGTATTACTGGTTAATATGACTCGCCTAAAAAAGAAAATGAAAGAAATCGGTATTGTTCATTTA
TTGGAAAATATACGAGGAAAGGGTTGGAAACTGTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(97-171)

Response regulator receiver domain (Response_reg)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.714

100

0.427