Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RJD36_RS02915 Genome accession   NZ_CP136943
Coordinates   530428..532086 (+) Length   552 a.a.
NCBI ID   WP_003063744.1    Uniprot ID   E0PCB0
Organism   Streptococcus pasteurianus strain WUSP082     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525428..537086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS02885 (RJD36_02885) - 525700..526536 (+) 837 WP_003063733.1 NAD(P)H-hydrate dehydratase -
  RJD36_RS02890 (RJD36_02890) xseA 526738..528066 (+) 1329 WP_058692785.1 exodeoxyribonuclease VII large subunit -
  RJD36_RS02895 (RJD36_02895) - 528056..528271 (+) 216 WP_058692786.1 exodeoxyribonuclease VII small subunit -
  RJD36_RS02900 (RJD36_02900) - 528271..529140 (+) 870 WP_117479327.1 polyprenyl synthetase family protein -
  RJD36_RS02905 (RJD36_02905) - 529133..529957 (+) 825 WP_003063741.1 TlyA family RNA methyltransferase -
  RJD36_RS02910 (RJD36_02910) - 529944..530414 (+) 471 WP_003063742.1 arginine repressor -
  RJD36_RS02915 (RJD36_02915) recN 530428..532086 (+) 1659 WP_003063744.1 DNA repair protein RecN Machinery gene
  RJD36_RS02920 (RJD36_02920) - 532224..533060 (+) 837 WP_013851580.1 DegV family protein -
  RJD36_RS02925 (RJD36_02925) - 533053..533901 (+) 849 WP_003063748.1 SGNH/GDSL hydrolase family protein -
  RJD36_RS02930 (RJD36_02930) - 533870..534472 (+) 603 WP_117479325.1 YpmS family protein -
  RJD36_RS02935 (RJD36_02935) - 534566..534841 (+) 276 WP_003063767.1 HU family DNA-binding protein -
  RJD36_RS02940 (RJD36_02940) - 535027..535221 (+) 195 WP_003063769.1 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62392.58 Da        Isoelectric Point: 4.4877

>NTDB_id=816319 RJD36_RS02915 WP_003063744.1 530428..532086(+) (recN) [Streptococcus pasteurianus strain WUSP082]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGARASLDVIRHGANKAEIEGLFSVGENPALTQIL
EENGIDVTEELIIRRDILQNGRSIGRINGQMVNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKH
YQELFESYRQLRKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKSGEDQVLNQKRDKLLNHKNIADTLTNAYVMLDDEE
FSSLSNIRSAMNDLMTLEEFDADYKEMSANVSEAYYILEEVTKHLGDVIDDLDFDAGSLQQIEARLEVIYSITRKYGGSV
DDVLEYYDNITKEYNLLTGNDESSDDMEKALKRLEKELIVAAEELSQERHALAKNLEAEIKQELADLYMEKADFQVQFTK
GKFNRDGNETVEFYISTNPGEGFKPLVKVASGGEISRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SNGQVLAISHLPQVIAIADYQFFIEKRSDENTTVSTVRLLTEEERVEEIAKMLAGSDITEMAREQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=816319 RJD36_RS02915 WP_003063744.1 530428..532086(+) (recN) [Streptococcus pasteurianus strain WUSP082]
ATGCTTTTAGAAATTTCCATTAAAAATTTTGCCATTATCGAAGAAATCTCGCTTACTTTTGAAAATGGCATGACGGTTTT
GACAGGGGAAACTGGAGCGGGGAAGTCGATTATTATTGATGCCATGAACCTCATGTTGGGGGCGCGGGCTAGTCTTGACG
TTATTCGTCATGGGGCTAACAAGGCTGAAATTGAAGGGCTTTTTTCGGTTGGTGAAAATCCTGCGCTCACACAGATTTTG
GAAGAAAATGGCATTGATGTGACAGAAGAATTGATTATTCGCCGTGACATTCTGCAAAATGGTCGTTCTATCGGTCGTAT
CAACGGACAAATGGTGAATCTGACAACGTTACGTGCCGTTGGGCAGTATCTGGTTGATATTCATGGACAACATGACCAAG
AAGAGTTGATGAAGCCCAATATGCACATTCGGATGTTGGATGAATTTGGTAATGAACAGTTTGCTGATGTCAAAAAACAT
TACCAAGAGCTTTTTGAAAGCTATCGTCAATTGCGTAAGCGTGTCGTGACCAAGCAAAAAAATGAACAAGAGCATAAAGC
GCGTATTGAAATGTTAGAATTTCAGATAGCAGAGATTGAAGCGGCAGCCTTGAAATCTGGTGAGGACCAGGTACTCAATC
AAAAACGTGATAAATTGCTTAATCATAAAAACATTGCAGATACGTTGACCAATGCTTATGTCATGCTTGATGACGAAGAA
TTTTCAAGTCTATCTAACATTCGTTCAGCCATGAATGATTTGATGACGCTCGAAGAATTTGATGCTGACTATAAAGAAAT
GTCAGCTAACGTTTCAGAGGCTTATTATATCCTAGAAGAAGTCACGAAACACCTAGGTGATGTCATTGATGACCTTGATT
TTGATGCGGGAAGCTTGCAACAAATCGAAGCGCGCCTAGAGGTGATTTATAGCATTACACGCAAATATGGCGGTAGTGTT
GATGATGTTTTAGAGTATTATGATAATATCACCAAGGAATACAATCTTTTGACTGGAAATGATGAGTCATCTGATGACAT
GGAAAAAGCCCTTAAACGCTTGGAAAAAGAATTGATTGTTGCTGCTGAAGAACTCAGTCAAGAACGCCATGCCTTGGCTA
AAAATTTGGAAGCTGAAATCAAGCAAGAGTTAGCTGATTTGTACATGGAAAAGGCTGATTTTCAAGTCCAATTCACCAAA
GGAAAATTCAACCGTGATGGAAATGAAACTGTTGAATTTTACATTTCAACGAACCCTGGTGAAGGCTTTAAACCACTCGT
TAAGGTTGCGTCTGGTGGTGAAATTTCTCGTTTAATGTTGGCTATCAAATCAGCATTTTCACGTAAAGAGGACAAAACAA
GTATCGTCTTTGACGAAGTGGATACTGGTGTATCTGGTCGCGTTGCGCAAGCTATTGCCCAAAAAATCTATAAAATCGGA
AGTAACGGACAAGTCTTGGCAATATCTCATTTACCACAAGTGATTGCCATTGCTGATTATCAGTTCTTTATCGAAAAACG
CAGTGATGAAAATACGACTGTTTCAACGGTTCGCTTGTTGACCGAAGAAGAACGAGTAGAAGAAATCGCTAAAATGCTTG
CTGGTAGCGATATTACTGAAATGGCACGCGAACAAGCTCGCGAACTATTGAAGAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PCB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.937

100

0.453