Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QCM40_RS00970 Genome accession   NZ_CP122516
Coordinates   177959..179272 (-) Length   437 a.a.
NCBI ID   WP_279955514.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172959..184272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS00940 (QCM40_00940) nadC 173422..174243 (-) 822 WP_279955510.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QCM40_RS00945 (QCM40_00945) nadA 174243..175253 (-) 1011 WP_279955511.1 quinolinate synthase NadA -
  QCM40_RS00950 (QCM40_00950) - 175243..176046 (-) 804 WP_279955512.1 phosphatidylserine decarboxylase -
  QCM40_RS00955 (QCM40_00955) - 176043..176546 (-) 504 WP_121278961.1 helix-turn-helix domain-containing protein -
  QCM40_RS00960 (QCM40_00960) - 176559..177053 (-) 495 WP_180466209.1 hypothetical protein -
  QCM40_RS00965 (QCM40_00965) mqnP 177046..177888 (-) 843 WP_279955513.1 menaquinone biosynthesis prenyltransferase MqnP -
  QCM40_RS00970 (QCM40_00970) comEC/comE3 177959..179272 (-) 1314 WP_279955514.1 ComEC/Rec2 family competence protein Machinery gene
  QCM40_RS00975 (QCM40_00975) - 179269..180735 (-) 1467 WP_279955515.1 replicative DNA helicase -
  QCM40_RS00980 (QCM40_00980) - 180746..182140 (-) 1395 WP_279955516.1 NAD(P)H-hydrate dehydratase -
  QCM40_RS00985 (QCM40_00985) crdS 182143..183345 (-) 1203 WP_279956546.1 copper-sensing histidine kinase CrdS -
  QCM40_RS00990 (QCM40_00990) crdR 183311..183952 (-) 642 WP_140519805.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50110.11 Da        Isoelectric Point: 9.7962

>NTDB_id=816251 QCM40_RS00970 WP_279955514.1 177959..179272(-) (comEC/comE3) [Helicobacter pylori strain HP34]
MKDKTFQGAFELLTTPKEYLLCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDCKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=816251 QCM40_RS00970 WP_279955514.1 177959..179272(-) (comEC/comE3) [Helicobacter pylori strain HP34]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAACCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGTTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTGCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTGAGC
GTGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947