Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QCM05_RS02110 Genome accession   NZ_CP122515
Coordinates   429894..431207 (-) Length   437 a.a.
NCBI ID   WP_279963272.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424894..436207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM05_RS02080 (QCM05_02080) nadC 425357..426178 (-) 822 WP_140446118.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QCM05_RS02085 (QCM05_02085) nadA 426178..427188 (-) 1011 WP_279963269.1 quinolinate synthase NadA -
  QCM05_RS02090 (QCM05_02090) - 427178..427981 (-) 804 WP_279963270.1 phosphatidylserine decarboxylase -
  QCM05_RS02095 (QCM05_02095) - 427978..428481 (-) 504 WP_121278961.1 helix-turn-helix domain-containing protein -
  QCM05_RS02100 (QCM05_02100) - 428494..428988 (-) 495 WP_140468073.1 hypothetical protein -
  QCM05_RS02105 (QCM05_02105) mqnP 428981..429823 (-) 843 WP_279963271.1 menaquinone biosynthesis prenyltransferase MqnP -
  QCM05_RS02110 (QCM05_02110) comEC/comE3 429894..431207 (-) 1314 WP_279963272.1 ComEC/Rec2 family competence protein Machinery gene
  QCM05_RS02115 (QCM05_02115) - 431204..432670 (-) 1467 WP_279963273.1 replicative DNA helicase -
  QCM05_RS02120 (QCM05_02120) - 432681..434075 (-) 1395 WP_279963274.1 NAD(P)H-hydrate dehydratase -
  QCM05_RS02125 (QCM05_02125) crdS 434078..435280 (-) 1203 WP_120877488.1 copper-sensing histidine kinase CrdS -
  QCM05_RS02130 (QCM05_02130) crdR 435246..435887 (-) 642 WP_064431541.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50302.23 Da        Isoelectric Point: 9.8515

>NTDB_id=816235 QCM05_RS02110 WP_279963272.1 429894..431207(-) (comEC/comE3) [Helicobacter pylori strain HP22]
MKDKIFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDSRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFWVRSFQIISLS
ALVFLNMLIIAHAFFPMFSPYQFFSIPLGLIFIVFFPLSLLLHAVGLGSLLDHLLSMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=816235 QCM05_RS02110 WP_279963272.1 429894..431207(-) (comEC/comE3) [Helicobacter pylori strain HP22]
TTGAAAGATAAAATTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTCAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTACTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTGGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCACTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGTTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGCTCTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATCACC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95