Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   R1T12_RS10715 Genome accession   NZ_CP136909
Coordinates   2262122..2262478 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa PA103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257122..2267478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T12_RS10690 (R1T12_10690) fabF 2257334..2258578 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  R1T12_RS10695 (R1T12_10695) pabC 2258578..2259393 (+) 816 WP_019485449.1 aminodeoxychorismate lyase -
  R1T12_RS10700 (R1T12_10700) mltG 2259399..2260448 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  R1T12_RS10705 (R1T12_10705) tmk 2260477..2261109 (+) 633 WP_003122486.1 dTMP kinase -
  R1T12_RS10710 (R1T12_10710) - 2261102..2262088 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  R1T12_RS10715 (R1T12_10715) pilZ 2262122..2262478 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  R1T12_RS10720 (R1T12_10720) - 2262493..2263269 (+) 777 WP_019485448.1 TatD family hydrolase -
  R1T12_RS10725 (R1T12_10725) - 2263495..2264628 (-) 1134 WP_003110201.1 aminotransferase class V-fold PLP-dependent enzyme -
  R1T12_RS10730 (R1T12_10730) - 2264714..2265352 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  R1T12_RS10735 (R1T12_10735) - 2265519..2266415 (+) 897 WP_019485447.1 radical SAM protein -
  R1T12_RS10740 (R1T12_10740) - 2266480..2267112 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=816212 R1T12_RS10715 WP_003091119.1 2262122..2262478(+) (pilZ) [Pseudomonas aeruginosa PA103]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=816212 R1T12_RS10715 WP_003091119.1 2262122..2262478(+) (pilZ) [Pseudomonas aeruginosa PA103]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449