Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   R1T29_RS08505 Genome accession   NZ_CP136903
Coordinates   1830653..1832197 (+) Length   514 a.a.
NCBI ID   WP_203505059.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825653..1837197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS08480 (R1T29_08480) - 1825954..1826274 (+) 321 WP_005454817.1 STAS domain-containing protein -
  R1T29_RS08485 (R1T29_08485) - 1826301..1827203 (+) 903 WP_005491469.1 OmpA family protein -
  R1T29_RS08490 (R1T29_08490) - 1827236..1829302 (+) 2067 WP_049877691.1 SLBB domain-containing protein -
  R1T29_RS08495 (R1T29_08495) - 1829302..1829988 (+) 687 WP_005454821.1 CpsD/CapB family tyrosine-protein kinase -
  R1T29_RS08500 (R1T29_08500) - 1830001..1830381 (+) 381 WP_025551756.1 Hpt domain-containing protein -
  R1T29_RS08505 (R1T29_08505) luxO 1830653..1832197 (+) 1545 WP_203505059.1 sigma-54 dependent transcriptional regulator Regulator
  R1T29_RS08510 (R1T29_08510) - 1832172..1833242 (+) 1071 WP_317675720.1 glycosyltransferase family 4 protein -
  R1T29_RS08515 (R1T29_08515) - 1833393..1834577 (+) 1185 WP_020840666.1 glycosyltransferase -
  R1T29_RS08520 (R1T29_08520) - 1834588..1835760 (+) 1173 WP_005483470.1 glycosyltransferase family 4 protein -
  R1T29_RS08525 (R1T29_08525) - 1835753..1837183 (+) 1431 WP_180759507.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57479.26 Da        Isoelectric Point: 5.7294

>NTDB_id=816149 R1T29_RS08505 WP_203505059.1 1830653..1832197(+) (luxO) [Vibrio parahaemolyticus strain X1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLARHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTAAHLPAQLTQKKTQARTVTPV
HVESSSPSSNLNGHNAPAMQTQPIEPVQPVQEVPDQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=816149 R1T29_RS08505 WP_203505059.1 1830653..1832197(+) (luxO) [Vibrio parahaemolyticus strain X1]
ATGAGACCAAGGGTGTTATTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGTGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGTAGCGTCGACTTAGCTGTAAACTTGATACAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTTAAACGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGTTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTTGGTGAAAGTGGCACGGGCAAAGAAGTGTGCGCCGAGGCCGTTCATCGCCAAAG
TGATCGCAGAGACAAACCTTTCATCGCCATAAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCGCACGGTGGGACGCTATTTCTG
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACAAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAGGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAGGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAAAAATTCTCTAACATTGATACTGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGCGGCTCACCTGCCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAGCAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGATCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.299

97.082

0.479