Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R1T29_RS06760 Genome accession   NZ_CP136903
Coordinates   1463735..1464715 (-) Length   326 a.a.
NCBI ID   WP_005454798.1    Uniprot ID   Q87Q07
Organism   Vibrio parahaemolyticus strain X1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458735..1469715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS06750 (R1T29_06750) - 1459234..1461678 (+) 2445 Protein_1247 collagenase -
  R1T29_RS06755 (R1T29_06755) - 1461929..1463725 (-) 1797 WP_005454994.1 aminopeptidase P family protein -
  R1T29_RS06760 (R1T29_06760) amiE 1463735..1464715 (-) 981 WP_005454798.1 ABC transporter ATP-binding protein Regulator
  R1T29_RS06765 (R1T29_06765) - 1464725..1465708 (-) 984 WP_025499312.1 ABC transporter ATP-binding protein -
  R1T29_RS06770 (R1T29_06770) - 1465719..1466651 (-) 933 WP_020903869.1 ABC transporter permease subunit -
  R1T29_RS06775 (R1T29_06775) oppB 1466661..1467581 (-) 921 WP_029999537.1 oligopeptide ABC transporter permease OppB -
  R1T29_RS06780 (R1T29_06780) - 1467748..1469358 (-) 1611 WP_258496070.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36406.21 Da        Isoelectric Point: 8.3113

>NTDB_id=816145 R1T29_RS06760 WP_005454798.1 1463735..1464715(-) (amiE) [Vibrio parahaemolyticus strain X1]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=816145 R1T29_RS06760 WP_005454798.1 1463735..1464715(-) (amiE) [Vibrio parahaemolyticus strain X1]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGATCTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAACCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGATTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGTCATATCAGCGACCGAGTAATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAACTGTTGCCCGGAGACCTCCCTTCTCCGCTCAACCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87Q07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.514

95.399

0.386
  amiE Streptococcus thermophilus LMD-9

40.514

95.399

0.386
  amiF Streptococcus salivarius strain HSISS4

45.455

84.356

0.383
  amiE Streptococcus salivarius strain HSISS4

39.744

95.706

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.055

83.742

0.377
  oppD Streptococcus mutans UA159

38.339

96.012

0.368