Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R8522_RS07405 Genome accession   NZ_AP026916
Coordinates   1468026..1468748 (-) Length   240 a.a.
NCBI ID   WP_001833285.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700006     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463026..1473748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8522_RS07395 (PC0006_15100) - 1465600..1466766 (-) 1167 WP_000521368.1 MalY/PatB family protein -
  R8522_RS07400 (PC0006_15110) - 1466774..1467868 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  R8522_RS07405 rcrP 1468026..1468748 (-) 723 WP_001833285.1 ABC transporter ATP-binding protein Regulator
  R8522_RS07410 - 1468935..1469708 (-) 774 Protein_1469 ABC transporter ATP-binding protein -
  R8522_RS07415 (PC0006_15130) amiA 1469880..1471838 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  R8522_RS07420 (PC0006_15140) - 1472041..1473663 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27166.04 Da        Isoelectric Point: 5.2119

>NTDB_id=81611 R8522_RS07405 WP_001833285.1 1468026..1468748(-) (rcrP) [Streptococcus pneumoniae strain PZ900700006]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=81611 R8522_RS07405 WP_001833285.1 1468026..1468748(-) (rcrP) [Streptococcus pneumoniae strain PZ900700006]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGGCCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362