Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   R1T29_RS00250 Genome accession   NZ_CP136903
Coordinates   53920..55755 (+) Length   611 a.a.
NCBI ID   WP_025507678.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain X1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 48920..60755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T29_RS00230 (R1T29_00230) ggt 49337..51097 (-) 1761 WP_317676093.1 gamma-glutamyltransferase -
  R1T29_RS00235 (R1T29_00235) - 51208..51867 (-) 660 WP_024700229.1 LysE family translocator -
  R1T29_RS00240 (R1T29_00240) - 51959..52756 (-) 798 WP_005458575.1 AraC family transcriptional regulator -
  R1T29_RS00245 (R1T29_00245) rarD 52831..53745 (-) 915 WP_005497386.1 EamA family transporter RarD -
  R1T29_RS00250 (R1T29_00250) recQ 53920..55755 (+) 1836 WP_025507678.1 ATP-dependent DNA helicase RecQ Machinery gene
  R1T29_RS00255 (R1T29_00255) - 55765..56070 (+) 306 WP_005458579.1 DUF3630 family protein -
  R1T29_RS00260 (R1T29_00260) - 56364..57032 (+) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  R1T29_RS00265 (R1T29_00265) gppA 57230..58723 (-) 1494 WP_029806621.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  R1T29_RS00270 (R1T29_00270) rhlB 58743..60056 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  R1T29_RS00275 (R1T29_00275) trxA 60168..60494 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69257.16 Da        Isoelectric Point: 6.8897

>NTDB_id=816095 R1T29_RS00250 WP_025507678.1 53920..55755(+) (recQ) [Vibrio parahaemolyticus strain X1]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTTARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=816095 R1T29_RS00250 WP_025507678.1 53920..55755(+) (recQ) [Vibrio parahaemolyticus strain X1]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGCCTCGAAAATCTGCCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCACAGTGGGGACACGAT
TTCCGTCCTGAATACGCTGCGCTGGGTCAGTTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCATAAGCCGATTTCTCAGATCATTCGTTATCTCGACACTCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTACCTGCTGAAGCGATGATGTTGTACGACCCCGCAGA
CATCAGTTGGCTACGCCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGTGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGTCTGCTGTTTCAAAACATTACTCGAAACTCGACGTTGCAACTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCACTGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393