Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R1Y14_RS07265 Genome accession   NZ_CP136899
Coordinates   1415329..1416996 (-) Length   555 a.a.
NCBI ID   WP_000923585.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1410329..1421996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS07240 (R1Y14_07240) - 1411378..1411680 (-) 303 WP_000590556.1 PTS sugar transporter subunit IIB -
  R1Y14_RS07245 (R1Y14_07245) - 1411718..1412194 (-) 477 WP_000242189.1 PTS sugar transporter subunit IIA -
  R1Y14_RS07250 (R1Y14_07250) - 1412374..1412616 (+) 243 WP_000693249.1 hypothetical protein -
  R1Y14_RS07255 (R1Y14_07255) lepA 1412697..1414520 (-) 1824 WP_001047213.1 translation elongation factor 4 -
  R1Y14_RS07260 (R1Y14_07260) - 1414599..1415327 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  R1Y14_RS07265 (R1Y14_07265) recN 1415329..1416996 (-) 1668 WP_000923585.1 DNA repair protein RecN Machinery gene
  R1Y14_RS07270 (R1Y14_07270) - 1417003..1417434 (-) 432 WP_001034415.1 arginine repressor -
  R1Y14_RS07275 (R1Y14_07275) - 1417427..1418242 (-) 816 WP_001041069.1 TlyA family RNA methyltransferase -
  R1Y14_RS07280 (R1Y14_07280) - 1418235..1419110 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  R1Y14_RS07285 (R1Y14_07285) - 1419107..1419319 (-) 213 WP_000043231.1 exodeoxyribonuclease VII small subunit -
  R1Y14_RS07290 (R1Y14_07290) xseA 1419297..1420637 (-) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  R1Y14_RS07295 (R1Y14_07295) udk 1420765..1421403 (-) 639 WP_001181378.1 uridine kinase -
  R1Y14_RS07300 (R1Y14_07300) - 1421511..1421813 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62848.28 Da        Isoelectric Point: 4.6232

>NTDB_id=816063 R1Y14_RS07265 WP_000923585.1 1415329..1416996(-) (recN) [Streptococcus pneumoniae strain ST62]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMTEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=816063 R1Y14_RS07265 WP_000923585.1 1415329..1416996(-) (recN) [Streptococcus pneumoniae strain ST62]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGACAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAACGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44