Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R1Y14_RS04425 Genome accession   NZ_CP136899
Coordinates   846112..846378 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 841112..851378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS04405 (R1Y14_04405) - 841367..841876 (+) 510 WP_000619958.1 N-acetyltransferase -
  R1Y14_RS04410 (R1Y14_04410) pheT 841953..844358 (+) 2406 WP_000961545.1 phenylalanine--tRNA ligase subunit beta -
  R1Y14_RS04415 (R1Y14_04415) - 844426..845427 (-) 1002 WP_000597988.1 endonuclease/exonuclease/phosphatase family protein -
  R1Y14_RS04420 (R1Y14_04420) - 845583..845986 (+) 404 Protein_830 helix-turn-helix domain-containing protein -
  R1Y14_RS04425 (R1Y14_04425) HI0659 846112..846378 (+) 267 WP_001810535.1 helix-turn-helix domain-containing protein Machinery gene
  R1Y14_RS04430 (R1Y14_04430) metE 846639..848888 (+) 2250 WP_000108214.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R1Y14_RS04435 (R1Y14_04435) metF 848952..849818 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R1Y14_RS10500 - 850000..850269 (-) 270 WP_001810539.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=816039 R1Y14_RS04425 WP_001810535.1 846112..846378(+) (HI0659) [Streptococcus pneumoniae strain ST62]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=816039 R1Y14_RS04425 WP_001810535.1 846112..846378(+) (HI0659) [Streptococcus pneumoniae strain ST62]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523