Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R1Y14_RS02025 Genome accession   NZ_CP136899
Coordinates   372703..373473 (+) Length   256 a.a.
NCBI ID   WP_000616157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367703..378473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS02010 (R1Y14_02010) - 369758..370195 (+) 438 WP_000076479.1 CoA-binding protein -
  R1Y14_RS02015 (R1Y14_02015) - 370378..371388 (-) 1011 WP_000009157.1 YeiH family protein -
  R1Y14_RS02020 (R1Y14_02020) - 371537..372706 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  R1Y14_RS02025 (R1Y14_02025) recO 372703..373473 (+) 771 WP_000616157.1 DNA repair protein RecO Machinery gene
  R1Y14_RS02030 (R1Y14_02030) plsX 373470..374462 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  R1Y14_RS02035 (R1Y14_02035) - 374468..374701 (+) 234 WP_000659556.1 acyl carrier protein -
  R1Y14_RS02040 (R1Y14_02040) - 374738..375038 (+) 301 Protein_356 transposase family protein -
  R1Y14_RS02045 (R1Y14_02045) blpU 375241..375471 (+) 231 Protein_357 bacteriocin-like peptide BlpU -
  R1Y14_RS02050 (R1Y14_02050) - 375474..375600 (+) 127 Protein_358 PncF family bacteriocin immunity protein -
  R1Y14_RS02055 (R1Y14_02055) comA 376187..378340 (+) 2154 WP_000668281.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29735.24 Da        Isoelectric Point: 5.1580

>NTDB_id=816017 R1Y14_RS02025 WP_000616157.1 372703..373473(+) (recO) [Streptococcus pneumoniae strain ST62]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=816017 R1Y14_RS02025 WP_000616157.1 372703..373473(+) (recO) [Streptococcus pneumoniae strain ST62]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992