Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8522_RS05965 Genome accession   NZ_AP026916
Coordinates   1192413..1194080 (-) Length   555 a.a.
NCBI ID   WP_054367358.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1187413..1199080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8522_RS05940 (PC0006_12110) - 1188461..1188763 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  R8522_RS05945 (PC0006_12120) - 1188801..1189277 (-) 477 WP_050138272.1 PTS sugar transporter subunit IIA -
  R8522_RS05950 (PC0006_12130) - 1189458..1189700 (+) 243 WP_054367355.1 hypothetical protein -
  R8522_RS05955 (PC0006_12140) lepA 1189781..1191604 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  R8522_RS05960 (PC0006_12150) - 1191683..1192411 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  R8522_RS05965 (PC0006_12160) recN 1192413..1194080 (-) 1668 WP_054367358.1 DNA repair protein RecN Machinery gene
  R8522_RS05970 (PC0006_12170) - 1194087..1194518 (-) 432 WP_001034415.1 arginine repressor -
  R8522_RS05975 (PC0006_12180) - 1194511..1195326 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  R8522_RS05980 (PC0006_12190) - 1195319..1196194 (-) 876 WP_000743819.1 polyprenyl synthetase family protein -
  R8522_RS05985 (PC0006_12200) - 1196191..1196403 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8522_RS05990 (PC0006_12210) xseA 1196381..1197721 (-) 1341 WP_000417489.1 exodeoxyribonuclease VII large subunit -
  R8522_RS05995 (PC0006_12220) udk 1197849..1198487 (-) 639 WP_001181378.1 uridine kinase -
  R8522_RS06000 (PC0006_12230) - 1198595..1198897 (-) 303 WP_000985093.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62732.19 Da        Isoelectric Point: 4.6517

>NTDB_id=81600 R8522_RS05965 WP_054367358.1 1192413..1194080(-) (recN) [Streptococcus pneumoniae strain PZ900700006]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYCVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=81600 R8522_RS05965 WP_054367358.1 1192413..1194080(-) (recN) [Streptococcus pneumoniae strain PZ900700006]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTGTGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAAGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment