Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QAY59_RS04960 Genome accession   NZ_CP122487
Coordinates   1010311..1010757 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MRSA45     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1005311..1015757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY59_RS04930 (QAY59_04920) gcvPA 1006237..1007583 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY59_RS04935 (QAY59_04925) gcvT 1007603..1008694 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY59_RS04940 (QAY59_04930) - 1008853..1009377 (-) 525 WP_001015121.1 shikimate kinase -
  QAY59_RS04945 (QAY59_04935) - 1009367..1009513 (-) 147 WP_001789879.1 hypothetical protein -
  QAY59_RS04950 (QAY59_04940) comGF 1009610..1010107 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY59_RS04955 (QAY59_04945) comGE 1010025..1010324 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY59_RS04960 (QAY59_04950) comGD 1010311..1010757 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY59_RS04965 (QAY59_04955) comGC 1010735..1011046 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY59_RS04970 (QAY59_04960) comGB 1011060..1012130 (-) 1071 WP_411907827.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY59_RS04975 (QAY59_04965) comGA 1012102..1013076 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY59_RS04980 (QAY59_04970) - 1013128..1013751 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  QAY59_RS04985 (QAY59_04975) - 1013748..1014077 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QAY59_RS04990 (QAY59_04980) - 1014077..1015063 (-) 987 WP_411907828.1 ROK family glucokinase -
  QAY59_RS04995 (QAY59_04985) - 1015060..1015263 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=815925 QAY59_RS04960 WP_001788899.1 1010311..1010757(-) (comGD) [Staphylococcus aureus strain IT-MRSA45]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=815925 QAY59_RS04960 WP_001788899.1 1010311..1010757(-) (comGD) [Staphylococcus aureus strain IT-MRSA45]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1