Detailed information    

insolico Bioinformatically predicted

Overview


Name   uvrA   Type   Machinery gene
Locus tag   R1T10_RS07325 Genome accession   NZ_CP136807
Coordinates   1479322..1482168 (+) Length   948 a.a.
NCBI ID   WP_017201044.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1474322..1487168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS07315 znuD 1474666..1476942 (+) 2277 WP_002226414.1 TonB-dependent zinc receptor ZnuD -
  R1T10_RS07320 - 1478370..1479167 (-) 798 WP_002226415.1 phosphatidylserine decarboxylase -
  R1T10_RS07325 uvrA 1479322..1482168 (+) 2847 WP_017201044.1 excinuclease ABC subunit UvrA Machinery gene
  R1T10_RS07330 - 1482200..1482370 (-) 171 WP_002244540.1 hypothetical protein -
  R1T10_RS07335 - 1482385..1482570 (-) 186 WP_079267076.1 hypothetical protein -
  R1T10_RS07340 - 1482586..1482855 (-) 270 WP_002244538.1 hypothetical protein -
  R1T10_RS07345 - 1483011..1483934 (+) 924 WP_014581105.1 YafY family protein -
  R1T10_RS07350 - 1484161..1484586 (-) 426 WP_079267156.1 hypothetical protein -
  R1T10_RS07355 - 1484609..1484938 (+) 330 WP_002217375.1 transposase -
  R1T10_RS07360 - 1485004..1485144 (-) 141 WP_002213739.1 hypothetical protein -
  R1T10_RS07365 sucD 1485173..1486063 (-) 891 WP_002217376.1 succinate--CoA ligase subunit alpha -

Sequence


Protein


Download         Length: 948 a.a.        Molecular weight: 105253.65 Da        Isoelectric Point: 6.6586

>NTDB_id=815855 R1T10_RS07325 WP_017201044.1 1479322..1482168(+) (uvrA) [Neisseria meningitidis NMB]
MCNHHPQHSHDNDTIRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQMMD
KPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEHNLPLSSQTVSQMVDAVLKLPEGTRVM
ILAPAVRERKGEFVDFFADLQAQGFARVRVDGEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGN
ERALAMEMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPELSLASGAIDGWD
KRNQFYFQMIQSLARHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFTYLSERGTTFNRSHAFEGIIPNLERRYRETDSE
TVREKLREYQNHRACPSCGGARLRKEARYVYVGGEPLHEVSAWPLTKTHQFFETLDLDGNKKQIAEKILKEITERLGFLI
NVGLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLRNLGNSVIVVEHDEDAI
READFVVDMGPGAGEHGGNVLIADTPENVAKCENSVTGQYLSGKKSIAVPSERTPVYPDRMLVLKGARGNNLKNVTLELP
LGLITCITGVSGSGKSTLINDTLAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIR
ELFAGVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETLEIQYKGKNISQVLDMT
VEEACEFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLL
EVIGRLKGKGNSIVIIEHNLDVIKTADWIVDLGPEGGDGGGRIIASGSPEEVAKVKGSYTGKYLKNIL

Nucleotide


Download         Length: 2847 bp        

>NTDB_id=815855 R1T10_RS07325 WP_017201044.1 1479322..1482168(+) (uvrA) [Neisseria meningitidis NMB]
ATGTGCAACCATCATCCCCAACATTCGCACGACAACGACACCATCCGCATCCGCGGCGCGCGCACGCATAATTTGAAAAA
CATCGATTTAGACATTCCGCGCCACAAACTCGTGGTGGTAACAGGATTGTCGGGCAGCGGCAAGTCGTCGCTGGCGTTTG
ACACGCTGTATGCCGAAGGGCAACGGCGTTATGTCGAGAGCCTTTCCGCCTATGCGCGGCAGTTTTTGCAGATGATGGAC
AAACCCGATGTCGATTTGATTGAAGGTCTGTCGCCTGCGATTTCCATCGAGCAGAAATCCACCAGCCACAACCCGCGTTC
CACCGTCGGCACGGTAACGGAAATCCACGACTACCTGCGCCTTTTGTACGCCCGCGTCGGCACGCCGTATTGCCCCGAAC
ACAATCTGCCGTTGTCGAGCCAAACCGTATCGCAGATGGTCGATGCCGTCTTAAAACTGCCGGAAGGCACGCGCGTGATG
ATTCTGGCGCCGGCGGTGCGCGAGCGTAAGGGCGAGTTTGTCGATTTCTTTGCCGACTTGCAGGCACAGGGTTTTGCGCG
CGTGCGCGTGGACGGCGAAGTCTATCAGTTGGACGAAGTGCCGAAGCTGGAAAAAAACATCAAACACAACATCGACGTGG
TCATCGACCGCGTGAAAGTGAAGGCGGACATCAAGCAGCGGCTGGCGGAAAGTTTTGAAACCGCGCTGCGCCACGGCAAC
GAGCGCGCGCTGGCGATGGAGATGGACAGCGGCGAAGAACATTGGTTTTCCGCGCGTTTCGCCTGCCCCGTATGTTCGTA
CAGCCTGCCTGAATTAGAGCCGCGTCTCTTTTCCTTCAACAACCCGATGGGGTCCTGCCCGACTTGCGACGGCTTGGGCA
ACACCAATTTCTTCGACCCCGAAAAAGTGGTCGCCCACCCCGAATTGTCGCTGGCTTCGGGCGCGATTGACGGCTGGGAC
AAGCGCAACCAGTTCTATTTCCAAATGATTCAGTCGCTGGCGCGGCATTACGGTTTCGACGTGCAGGCTGCTTGGGAAAC
GCTACCTGAAAAAGTCAAAAAAGTCGTGTTGCACGGCTCGGGCAAGGAAGTCATTGATTTCACTTACCTGTCCGAACGCG
GCACCACCTTCAACCGCAGCCACGCCTTCGAAGGCATCATTCCCAATCTCGAACGCCGCTACCGCGAAACCGACAGCGAA
ACCGTGCGCGAAAAATTGCGCGAATACCAGAACCACCGCGCCTGCCCGAGCTGCGGCGGTGCACGTTTGCGCAAAGAAGC
GCGCTACGTTTACGTCGGCGGCGAACCGTTGCACGAAGTCTCCGCCTGGCCGCTGACCAAAACCCACCAATTCTTTGAAA
CGCTGGATTTGGACGGCAACAAAAAACAAATCGCCGAAAAAATCCTCAAAGAAATCACCGAGCGGCTTGGCTTTTTGATT
AATGTCGGGCTGGATTACCTGAATCTCTCCCGTTCCGCCGAAACCCTTTCCGGCGGCGAAGCCCAGCGCATCCGCCTCGC
CAGCCAAATCGGCAGCGGCCTGACCGGCGTGATGTACGTTTTGGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAACG
ACCGCCTGCTCGCCACCCTCAAACGCCTGCGTAATTTGGGCAACAGCGTGATTGTGGTCGAACACGACGAAGACGCCATC
CGCGAAGCCGATTTCGTCGTCGATATGGGCCCCGGCGCGGGCGAACACGGCGGCAACGTATTGATTGCCGACACGCCCGA
AAACGTCGCCAAATGCGAAAACTCCGTTACCGGACAATACCTCAGCGGCAAAAAATCCATTGCCGTGCCGTCTGAACGCA
CGCCCGTCTATCCCGACCGAATGCTCGTCCTCAAAGGCGCACGCGGCAACAATCTCAAAAACGTTACCCTCGAACTGCCG
CTCGGTTTGATTACCTGCATCACCGGCGTATCCGGCAGCGGCAAATCCACCCTGATTAACGACACCCTCGCCAAAATCAC
CGCCCGCGAACTCAACCGAGCCCAAGAAGAACCCGCCCCATACGACGACATCCGCGGCCTCGAACACCTCGACAAAGTCA
TCAATGTCGACCAATCCCCGATCGGCCGCACCCCGCGCTCCAACCCCGCCACCTACACCGGCCTGTTCACCCCCATCCGC
GAACTCTTCGCCGGCGTACCCCTCTCGCGCGAACGCGGCTACAACGTCGGCAGATTCTCCTTCAACGTCAAAGGCGGCCG
CTGCGAAGCCTGCCAAGGCGACGGCGTGATTAAAGTCGAAATGCACTTCCTGCCCGACGTGTACGTCCCCTGCGAAGTCT
GCCACGGCAAACGCTACAACCGCGAAACCCTCGAAATCCAATACAAAGGCAAAAACATCAGCCAAGTCCTCGACATGACC
GTCGAAGAAGCCTGCGAATTTTTCGACGCCGTCCCCACCGTATCGCGCAAACTGCAAACCCTGATGGACGTAGGCCTAGG
CTACATCCGCCTCGGCCAGTCCGCCACCACCCTCTCCGGCGGCGAAGCCCAGCGCGTCAAACTCGCCTTGGAACTCTCCA
AACGCGACACCGGCAGAACACTCTACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGACATCGCCCTGCTGCTG
GAAGTGATAGGCCGTCTGAAAGGCAAAGGCAACTCGATTGTGATTATTGAGCATAATCTGGATGTGATTAAAACTGCAGA
TTGGATTGTGGATTTAGGGCCCGAGGGGGGCGATGGCGGAGGGAGGATTATTGCTTCAGGTAGCCCGGAGGAAGTGGCGA
AGGTTAAGGGGAGTTATACTGGGAAGTATTTGAAGAATATACTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

59.362

99.156

0.589

  uvrA Streptococcus pneumoniae TIGR4

59.362

99.156

0.589

  uvrA Streptococcus pneumoniae D39

59.362

99.156

0.589