Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QAY83_RS04680 Genome accession   NZ_CP122484
Coordinates   967408..967854 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA63     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962408..972854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY83_RS04650 (QAY83_04640) gcvPA 963334..964680 (-) 1347 WP_411906134.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QAY83_RS04655 (QAY83_04645) gcvT 964700..965791 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  QAY83_RS04660 (QAY83_04650) - 965950..966474 (-) 525 WP_001015123.1 shikimate kinase -
  QAY83_RS04665 (QAY83_04655) - 966464..966610 (-) 147 WP_001789879.1 hypothetical protein -
  QAY83_RS04670 (QAY83_04660) comGF 966707..967204 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QAY83_RS04675 (QAY83_04665) comGE 967122..967421 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QAY83_RS04680 (QAY83_04670) comGD 967408..967854 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QAY83_RS04685 (QAY83_04675) comGC 967832..968143 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QAY83_RS04690 (QAY83_04680) comGB 968157..969227 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QAY83_RS04695 (QAY83_04685) comGA 969199..970173 (-) 975 WP_217788802.1 competence type IV pilus ATPase ComGA Machinery gene
  QAY83_RS04700 (QAY83_04690) - 970198..971844 (-) 1647 WP_000277718.1 IS1182 family transposase -
  QAY83_RS04705 (QAY83_04695) - 972139..972762 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=815798 QAY83_RS04680 WP_001788899.1 967408..967854(-) (comGD) [Staphylococcus aureus strain SW-MSSA63]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=815798 QAY83_RS04680 WP_001788899.1 967408..967854(-) (comGD) [Staphylococcus aureus strain SW-MSSA63]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1