Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   M0M55_RS09295 Genome accession   NZ_CP136800
Coordinates   1971745..1972074 (+) Length   109 a.a.
NCBI ID   WP_108084175.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A6-17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1966745..1977074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M55_RS09280 (M0M55_09280) - 1967445..1968404 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  M0M55_RS09285 (M0M55_09285) - 1968401..1969426 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  M0M55_RS09290 (M0M55_09290) - 1969557..1971554 (+) 1998 WP_023091542.1 polysaccharide biosynthesis protein -
  M0M55_RS09295 (M0M55_09295) comEA/comE1 1971745..1972074 (+) 330 WP_108084175.1 ComEA family DNA-binding protein Machinery gene
  M0M55_RS09305 (M0M55_09305) - 1972291..1973487 (-) 1197 WP_108084176.1 amino acid aminotransferase -
  M0M55_RS09310 (M0M55_09310) uvrB 1973675..1975687 (+) 2013 WP_043093399.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=815733 M0M55_RS09295 WP_108084175.1 1971745..1972074(+) (comEA/comE1) [Pseudomonas aeruginosa strain A6-17]
MHLIKSALLLILFACLPFSASAAPVAVGKNPLAATTPATTLSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=815733 M0M55_RS09295 WP_108084175.1 1971745..1972074(+) (comEA/comE1) [Pseudomonas aeruginosa strain A6-17]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGGCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCCTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385