Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RYQ61_RS08905 Genome accession   NZ_CP136799
Coordinates   1768276..1768746 (-) Length   156 a.a.
NCBI ID   WP_020998594.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763276..1773746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS08885 (RYQ61_08885) - 1763303..1763854 (-) 552 WP_003072608.1 GNAT family N-acetyltransferase -
  RYQ61_RS08890 (RYQ61_08890) - 1763933..1765192 (-) 1260 WP_102567988.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  RYQ61_RS08895 (RYQ61_08895) metK 1765529..1766719 (-) 1191 WP_020998596.1 methionine adenosyltransferase -
  RYQ61_RS08900 (RYQ61_08900) - 1766990..1768264 (-) 1275 WP_020998595.1 dihydroorotase -
  RYQ61_RS08905 (RYQ61_08905) mutX 1768276..1768746 (-) 471 WP_020998594.1 8-oxo-dGTP diphosphatase Machinery gene
  RYQ61_RS08910 (RYQ61_08910) - 1768773..1769426 (-) 654 WP_009568677.1 uracil-DNA glycosylase -
  RYQ61_RS08915 (RYQ61_08915) - 1769455..1770441 (-) 987 WP_020998593.1 Gfo/Idh/MocA family protein -
  RYQ61_RS08920 (RYQ61_08920) - 1770882..1771595 (-) 714 WP_102567987.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18175.63 Da        Isoelectric Point: 4.5298

>NTDB_id=815706 RYQ61_RS08905 WP_020998594.1 1768276..1768746(-) (mutX) [Streptococcus intermedius strain XH2169]
MVKLATICYVDNGKEFLMLHRNKKPNDVHAGKWIGVGGKLENGETPQECAVREIFEETGLRVKKPILKGIITFPEFTPNH
DWYTYVFKVTEFEGELIDCDEGTLEWVPYEQVLSRPTWEGDLTFISWILEERPFFSAKFSYKGETLVESHVDFYED

Nucleotide


Download         Length: 471 bp        

>NTDB_id=815706 RYQ61_RS08905 WP_020998594.1 1768276..1768746(-) (mutX) [Streptococcus intermedius strain XH2169]
ATGGTTAAATTAGCAACGATTTGCTATGTGGACAATGGAAAAGAATTTCTGATGTTACATCGAAATAAAAAGCCCAATGA
TGTCCATGCTGGCAAGTGGATTGGTGTTGGTGGAAAATTAGAAAATGGCGAAACACCACAGGAGTGTGCTGTCCGAGAAA
TCTTTGAAGAGACGGGATTGCGCGTGAAAAAGCCGATATTAAAAGGTATTATCACTTTTCCAGAGTTTACACCGAACCAT
GACTGGTACACTTATGTATTTAAAGTGACAGAGTTTGAGGGAGAACTGATTGACTGCGATGAAGGTACTTTAGAATGGGT
ACCTTATGAACAAGTTCTATCTAGACCAACTTGGGAGGGAGATCTTACTTTTATATCTTGGATTTTAGAAGAAAGACCGT
TTTTCTCGGCCAAATTTTCTTACAAAGGAGAGACGTTAGTGGAGAGCCATGTTGATTTTTATGAAGATTAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(5-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

78.065

99.359

0.776