Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RYQ61_RS04355 Genome accession   NZ_CP136799
Coordinates   818768..820696 (-) Length   642 a.a.
NCBI ID   WP_102568181.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 813768..825696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS04335 (RYQ61_04335) purM 814733..815755 (+) 1023 WP_102568194.1 phosphoribosylformylglycinamidine cyclo-ligase -
  RYQ61_RS04340 (RYQ61_04340) purN 815755..816309 (+) 555 WP_102568184.1 phosphoribosylglycinamide formyltransferase -
  RYQ61_RS04345 (RYQ61_04345) - 816416..817123 (+) 708 WP_002275346.1 suppressor of fused domain protein -
  RYQ61_RS04350 (RYQ61_04350) purH 817165..818712 (+) 1548 WP_102568182.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  RYQ61_RS04355 (RYQ61_04355) lytF 818768..820696 (-) 1929 WP_102568181.1 GBS Bsp-like repeat-containing protein Regulator
  RYQ61_RS04360 (RYQ61_04360) purD 820891..822150 (+) 1260 WP_102568180.1 phosphoribosylamine--glycine ligase -
  RYQ61_RS04365 (RYQ61_04365) - 822210..823391 (+) 1182 WP_102568179.1 ATP-grasp domain-containing protein -
  RYQ61_RS04370 (RYQ61_04370) purE 823714..824202 (+) 489 WP_102568178.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RYQ61_RS04375 (RYQ61_04375) purK 824189..825280 (+) 1092 WP_102568177.1 5-(carboxyamino)imidazole ribonucleotide synthase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 71596.19 Da        Isoelectric Point: 8.7209

>NTDB_id=815658 RYQ61_RS04355 WP_102568181.1 818768..820696(-) (lytF) [Streptococcus intermedius strain XH2169]
MKKYSQLFLLSSALLSVFSAQLTVQASEANNASKSSNPTTLASDVTVNVSGNSISINYIRSQAQNPYTISHAVWSDENGQ
DDLKWYSTSQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGTTFTLNRPTSQTKITTAGQIGQIHFTRNKDQKNSKIV
HAVWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFSEPGIMDIRIK
NVPETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHVYGESYVKPEFTGLAGTTVQVRSDQ
LPSEEEQKPLFSVENINQEQGTYTVKIKETSKSKSIQSVRVPIWSTTNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGT
YINHIYVKYKDGSEHSYATDSVSMSAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGN
GIYKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNG
GDWATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHTAGQGAVSYIY
PK

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=815658 RYQ61_RS04355 WP_102568181.1 818768..820696(-) (lytF) [Streptococcus intermedius strain XH2169]
ATGAAAAAATATAGTCAATTGTTTTTACTATCCAGCGCCCTTTTGAGTGTTTTTTCAGCTCAACTAACAGTTCAAGCCTC
GGAAGCAAATAATGCTTCAAAAAGCTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCA
TTTCTATCAACTACATACGTTCACAAGCCCAAAACCCCTACACCATTTCCCATGCTGTTTGGTCTGATGAAAATGGACAA
GATGACCTTAAATGGTATTCCACATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGATACGGTACTTTCCA
TGTCCATACATATATCAACATCAATGGTAAAATGATCGGTTTAAATGGAACGACTTTCACTCTGAACAGACCTACTAGTC
AAACAAAAATTACGACAGCTGGGCAGATTGGGCAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTT
CATGCCGTTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTT
TTCCAAACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTATCAGTCAGGTA
CCACTTTTAACCTTGAAAAACCAAACCCTACTATCCAAACTAGTTTTTCAGAACCTGGCATCATGGATATTCGGATAAAA
AATGTCCCTGAAACAATCTATAAACTTACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGC
AGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACA
TTCATGTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACGGTACAAGTTCGTTCCGATCAA
TTACCTTCAGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGGTCAAAAT
TAAGGAAACTTCAAAATCCAAATCCATTCAATCCGTTCGCGTTCCTATTTGGAGTACTACAAATCAGAGTAATATCAAAT
GGTACACAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACC
TATATCAATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTCCGCAGA
ACAGATAAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTGACAGATGCTTATGGAGATG
GAAATATCATCCTGCCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAAT
GGTATCTACAAGTTCACTATTGATACGCAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAA
CGGTAAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATATCCTTTCAACCCAATTATGCCGCTG
CAACGACTTATCCAAAAGGTCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGCAACTACTGGGGCAATGGT
GGCGATTGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGAC
AGATGGTAGTTACGGACACGTTGGAGTCGTCACTCACGTCGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACG
CTGGGAAACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCTCATACAGCAGGACAAGGTGCAGTTAGTTATATTTAT
CCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(440-516)

GBS Bsp-like repeat (GBS_Bsp-like)

(226-300)

GBS Bsp-like repeat (GBS_Bsp-like)

(333-419)

GBS Bsp-like repeat (GBS_Bsp-like)

(68-125)

CHAP domain (CHAP)

(535-612)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.19

81.776

0.361